PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0225800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 550aa    MW: 59650.5 Da    PI: 9.5159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0225800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19367416255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+ +++g
  ORGLA08G0225800.1 367 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAAVRFKG 416
                        7********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102501.4E-1789208IPR019378GDP-fucose protein O-fucosyltransferase
PfamPF008472.9E-12367415IPR001471AP2/ERF domain
PROSITE profilePS5103225.198367424IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22367426IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-32367425IPR001471AP2/ERF domain
SMARTSM003801.4E-35367430IPR001471AP2/ERF domain
PRINTSPR003671.1E-11368379IPR001471AP2/ERF domain
CDDcd000182.22E-12375425No hitNo description
PRINTSPR003671.1E-11390406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSSSASAAAW WARSRVRILL PVIFLAPALY FLLSPPSSPP FFFTLPTSRE VSPSASGSRV  60
IWAQRRVAEW RPCGWWRAAM PAPSRRNGYI RIDCYGGLNQ LRRDVRLCDG IAVARLLNAT  120
MVLPKFEVAA YWNESSGFAD VFDVDYFIEQ TRGYVEVVKD MPEEIASKEP FKVDCSKRKG  180
HFDYVETVLP ALLEHQYISL TPAMSQRRDS AIEAARGEDR KALTAIKGTR VDRLREASDT  240
GHHRGRHKRA RSSPPRHDDE PPPPPPLSPV VTGGAHGGAG GAEWHSTVLA EDVESAVIVV  300
ALTHVISSTA AEVTTAVPPV TVAPQRAATA TMFGQQVMQQ PPRGFPPLPS SSGSAATAPE  360
QQPPRRRYRG VRQRPWGKWA AEIRDPVKAA RVWLGTFDTA EDAARAYDAA AVRFKGSKAK  420
VNFPDEVAGA SIAAVQLPRH HQHHPPTSLP PLPPPLPVPA HLRPHFSLAG GQSTTPAPTA  480
AAVAAPPREE FPDLSSYAHI LQSGDLEYDF HAAVSAGLTT TAGRSSSSSS LSMSPPSEDL  540
DYKPPFGPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22368427363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22368427666ATERF1
3gcc_A7e-22368427666ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0225800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.10.0PREDICTED: uncharacterized protein LOC102713488
TrEMBLI1QLF70.0I1QLF7_ORYGL; Uncharacterized protein
STRINGORGLA08G0225800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP736466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-16related to AP2 6l