PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 390aa MW: 41425.1 Da PI: 5.125

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0219000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3.1e-35	49	140	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+++l ORGLA08G0219000.1 49 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRL 131 9***************************************************************99.........*********** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++i+r+k ORGLA08G0219000.1 132 LCEIHRRKV 140 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.3E-38	40	133	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-59	45	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.83E-35	46	138	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.7E-20	49	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-31	49	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	88	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-20	100	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MADQTAAAVV VVGGAAATMG EPSPPPPAPA AEAAGVGVGQ QQRTVPTPFL TKTYQLVDDP 60 AVDDVISWND DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA 120 NDCFRRGERR LLCEIHRRKV TPPAPAATTA AVAAAIPMAL PVTTTRDGSP VLSGEEQVIS 180 SSSSPEPPLV LPQAPSGSGS GGVASGDVGD ENERLRRENA QLARELSQMR KLCNNILLLM 240 SKYASTQQLD AANASSAAGN NNNNNCSGES AEAATPLPLP AVLDLMPSCP GAASAAAPVS 300 DNEEGMMSAK LFGVSIGRKR MRHDGGGDDD HAATVKAEPM DGRPHGKDEH SAETQAWPIY 360 RPRPVYQPIR ACNGYEYDRA GSDQDGSNST

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MADQTAAAVV VVGGAAATMG EPSPPPPAPA AEAAGVGVGQ QQRTVPTPFL TKTYQLVDDP  60
AVDDVISWND DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA  120
NDCFRRGERR LLCEIHRRKV TPPAPAATTA AVAAAIPMAL PVTTTRDGSP VLSGEEQVIS  180
SSSSPEPPLV LPQAPSGSGS GGVASGDVGD ENERLRRENA QLARELSQMR KLCNNILLLM  240
SKYASTQQLD AANASSAAGN NNNNNCSGES AEAATPLPLP AVLDLMPSCP GAASAAAPVS  300
DNEEGMMSAK LFGVSIGRKR MRHDGGGDDD HAATVKAEPM DGRPHGKDEH SAETQAWPIY  360
RPRPVYQPIR ACNGYEYDRA GSDQDGSNST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_A	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_B	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_C	2e-26	45	141	7	112	Heat shock factor protein 1
5hdn_D	2e-26	45	141	7	112	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00575	DAP	Transfer from AT5G62020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0219000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU406354	0.0	CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBank	CU406884	0.0	CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025875859.1	0.0	heat stress transcription factor B-2b isoform X2
Swissprot	Q6Z9C8	0.0	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	I1QL89	0.0	I1QL89_ORYGL; Uncharacterized protein
STRING	ORGLA08G0219000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-61	heat shock transcription factor B2A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]