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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA08G0177600.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
NAC |
Protein Properties |
Length: 336aa MW: 36655.4 Da PI: 7.2318 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA08G0177600.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169.1 | 1.4e-52 | 24 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeelv++yL++kv + + v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+e
ORGLA08G0177600.1 24 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARIGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDRE 114
79*************************888.455***************988999************************************* PP
NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+++ +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
ORGLA08G0177600.1 115 VVAAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 154
**998888999***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010014 | Biological Process | meristem initiation |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
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to blast |
MGDALWEMLG EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGA CCGGVDIAEV 60 DLNRCEPWEL PEAARIGEKE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDREVVAAAA 120 AGGALIGMKK TLVFYKGRAP RGEKTKWVLH EYRLDGDFAA ARRSTKEEWV ICRIFHKVGD 180 QYSKLMMMKS PASYYLPVSH HHPSSIFHDL PPVPFPNPSL VPFHHDLPTS FHPPLLQHSH 240 ANSKNSSSNN GGFVFPNEPN TTNSSDNHIS CNGAMAAAAF PSFSCASTVT GKGGPPAQLG 300 VNAGQQEPPP PTWMDAYLQH SGFIYEMGPP AVPRGA
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-49 | 24 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-49 | 24 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-49 | 24 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-49 | 24 | 177 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-49 | 21 | 177 | 17 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-49 | 24 | 177 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-49 | 24 | 177 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP006049 | 0.0 | AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Publications
? help Back to Top |
- Chen C, et al.
Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] - Espinosa-Ruiz A, et al.
TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]
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