PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0174800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 397aa    MW: 41448.1 Da    PI: 8.4764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0174800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13328373655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  ORGLA08G0174800.1 328 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 373
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16325382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.41E-13326377No hitNo description
Gene3DG3DSA:4.10.280.103.1E-15327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPATATA AAAHFPDDPT MATQHHHQQQ QMMFQHHPQQ MASVEGLYRT  120
VSSTGIDAAT AAGGGGGGLL RQSSSPAGFL NHLNMDNGYG SMLRAGMAAA AGGGGGVGFR  180
NGANAAAAAD SPGGSGGRLK GQLSFSSRQG SLMSQISEMG SEELGGSSPE GAGGGGGGGG  240
RGYLSGYPMS SGWEESSLMS DTNISGVKRQ RDSSEPSQNG GGGGGLAHQF SLPKTSSEMA  300
AIEKFLQFQD AVPCKIRAKR GCATHPRSIA ERVRRTRISE RIRKLQELVP NMDKQTNTAD  360
MLDLAVDYIK DLQKQVKGLN DSRANCTCSA KHQQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0174800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.10.0transcription factor bHLH130
TrEMBLI1QJZ70.0I1QJZ7_ORYGL; Uncharacterized protein
STRINGORGLA08G0174800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-45bHLH family protein