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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORGLA08G0173000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C2H2 |
| Protein Properties |
Length: 443aa MW: 47232.9 Da PI: 6.4222 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA08G0173000.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.4 | 0.00046 | 359 | 379 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +Cgk F k + ++H +++
ORGLA08G0173000.1 359 CRKCGKAFAVKGDWRTHEKNC 379
*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAHLPP PLPPPYAALY PTAGGVGVGV 60
GAHHHHHQYP PAAFFHPPPV HQQHQAPPSP PLREALPLLS LSPTPARRGG VVDAAADSDS 120
DDDDDGDCCY HHLQDQEGAA AGSTATPAAA AARAPLFADL NCIPTCCGDD NDGGDPMDVE 180
VAGTTADIDA AVALRIGLPA GGTEADLLSG LTGAGIEHEE EEEDCKVDGG GSGGDDEVVP 240
LGFSSTPIGK LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNMQMQM HMWGHGSQYR 300
KGPESLRGVQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD FRTLQTHYKR KHGLKPFLCR 360
KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH ARAFGHAHTA LDADDDDGAV 420
SDADAVVRPS SSMAASSLQP PPR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK287566 | 0.0 | AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence. |
