PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0164200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 506aa    MW: 54826.7 Da    PI: 8.1584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0164200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.6e-18221270255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  ORGLA08G0164200.1 221 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 270
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-23218291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19219294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.54E-16221274No hitNo description
PfamPF000104.0E-15221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQVEK  60
RADQTPPPPP PPHAAVTAEK QLLHQHALAA AGAFTISHAV AAAATAVKQE PPFAPWCQPV  120
AAVDPRGHQW SLPIAARAVA VASSRPQQQQ QQPPPPERKG GGGFMDAGSR SSGGAGFDDD  180
DGHAARREVS SSLKELTVRV EGKGGSCSGS AGTDQMPNTP RSKHSATEQR RRSKINDRFQ  240
LLRDLLPHND QKRDKASFLL EVIEYIRFLQ EKVQKYEVSY PEWNQENAKV VPWTNIYFRS  300
SWKNAQNKGQ VPADHSPDPP ELLKNGSPYM FPFTGNSDNN NAVETAAASG AQDQAETNPM  360
SRVSYRSVDT PSPNNVADKV TSQPHAQLVR PSPAENHTVN CDKLNNSDLA IDEGTISLSS  420
QYSQELLNKL NHALENSGID LSQASISVQI NLGKRAMKRS TPAATSTSKE LTDPASNSQA  480
MGRQLRLGDG AEEHRQASKR HKSDNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0164200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLI1QJP10.0I1QJP1_ORYGL; Uncharacterized protein
STRINGORGLA08G0164200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-57BES1-interacting Myc-like protein 2