PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA08G0163300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 366aa MW: 38509.1 Da PI: 6.72

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0163300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	186	234	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq ORGLA08G0163300.1 186 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 234 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-17	180	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.90E-11	181	238	No hit	No description
PROSITE profile	PS50888	15.51	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-16	185	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-7	186	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-10	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV 60 SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKK RRSDEIAGTD 120 HANASNALAD SGNETECSKD ANGEVIGPPA TAAAGGKSKG KGAKDAGEAQ KEGYSHVRAR 180 KGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA LMLDEIINYV QSLQRQVEFL 240 SMKLSAVNPR IDLDIESLVN NSKDVLRFPG QPSTAPMGFS FSTEMMPGLQ LSRPGILQGG 300 VHGMINPDVF TSLMQKQQQN DKGAFREPQM HQTLDGSFRN TAQMPYPQVM SSEELSIRQD 360 QDGFHM

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSCA AAPPPVQQPA MDSLAWSSTV  60
SPSTGAATAA SGAGFLLPPA AVRGGFGSFP VNSGGIVEPA GDCSSESKKK RRSDEIAGTD  120
HANASNALAD SGNETECSKD ANGEVIGPPA TAAAGGKSKG KGAKDAGEAQ KEGYSHVRAR  180
KGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA LMLDEIINYV QSLQRQVEFL  240
SMKLSAVNPR IDLDIESLVN NSKDVLRFPG QPSTAPMGFS FSTEMMPGLQ LSRPGILQGG  300
VHGMINPDVF TSLMQKQQQN DKGAFREPQM HQTLDGSFRN TAQMPYPQVM SSEELSIRQD  360
QDGFHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0163300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004557	1e-180	AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBank	AP014964	1e-180	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-180	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650276.1	0.0	transcription factor bHLH79
Swissprot	Q9CAA9	4e-49	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A0D3H1K5	0.0	A0A0D3H1K5_9ORYZ; Uncharacterized protein
TrEMBL	I1QJN2	0.0	I1QJN2_ORYGL; Uncharacterized protein
STRING	ORGLA08G0163300.1	0.0	(Oryza glaberrima)
STRING	OBART08G18760.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26260.3	1e-46	cryptochrome-interacting basic-helix-loop-helix 5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]