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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA08G0161200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 320aa MW: 35593.8 Da PI: 6.4239 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA08G0161200.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 63.4 | 5.1e-20 | 30 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e
ORGLA08G0161200.1 30 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 114
*************************************999987777889*****************988776664......68*******8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MAQEAASAAA AGEEGALPQR RRKSAPGQPW AHMETMHLLD AYEERWTRLR RGQLKAQQWE 60 EVAADVAARC AASGAALRKT GTQCRHKLEK LRKRYRIEGA RPVTSLWPYF RRMERLERGP 120 LPVSSAFPPP PPAASPPAAA SDEDDDDDDD DEEDDEEEEE VEEPIPRNNT RSINGILRDS 180 GGGGGGFSGF APRPPPQQPP PSFAMLSTAP PRKRVPYEAF QAKVAMADKV KEEEPPPVAT 240 RPGGGTNEQL SAVVRDFGQG IMRLERRRME MQWEIDRGWK ETEARHNRML LDAQRHLHEA 300 LAATPPPLKK ARREHGGDGS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005918 | 0.0 | AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09. |
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |