PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0161200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 320aa    MW: 35593.8 Da    PI: 6.4239
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0161200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.45.1e-2030114286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W + e+++L++a++e+++rlrrg+lk+++Weev++ +      +   ++++ +qC++k+e+l+kry+ + ++         s +pyf+++e
  ORGLA08G0161200.1  30 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 114
                        *************************************999987777889*****************988776664......68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1828116No hitNo description
SMARTSM005954.0E-537121IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAQEAASAAA AGEEGALPQR RRKSAPGQPW AHMETMHLLD AYEERWTRLR RGQLKAQQWE  60
EVAADVAARC AASGAALRKT GTQCRHKLEK LRKRYRIEGA RPVTSLWPYF RRMERLERGP  120
LPVSSAFPPP PPAASPPAAA SDEDDDDDDD DEEDDEEEEE VEEPIPRNNT RSINGILRDS  180
GGGGGGFSGF APRPPPQQPP PSFAMLSTAP PRKRVPYEAF QAKVAMADKV KEEEPPPVAT  240
RPGGGTNEQL SAVVRDFGQG IMRLERRRME MQWEIDRGWK ETEARHNRML LDAQRHLHEA  300
LAATPPPLKK ARREHGGDGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823QRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0161200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059180.0AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648379.11e-146trihelix transcription factor ASIL2
TrEMBLI1QJL10.0I1QJL1_ORYGL; Uncharacterized protein
STRINGORGLA08G0161200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-19Trihelix family protein