 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA08G0159100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 270aa MW: 29091 Da PI: 4.3167 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA08G0159100.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.9 | 4e-19 | 43 | 96 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
ORGLA08G0159100.1 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 96
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 133.8 | 6.2e-43 | 42 | 134 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrls eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e++
ORGLA08G0159100.1 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEVQ 133
69**************************************************************************************9998 PP
HD-ZIP_I/II 93 e 93
e
ORGLA08G0159100.1 134 E 134
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MRSPAALLQV VADGGGGVGV EEEMDVDEDM AMCGGRGGGG GEKKRRLSVE QVRALERSFE 60
TENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARWKTKQL ERDYAALRQS YDALRADHDA 120
LRRDKDALLA EVQELKGKLG DEDAAASFSS VKEEEEDPAA SDADPPATGA PQGSSESDSS 180
AVLNDAEILP HKLAPAAAAD AAASEETEAV VTGAALLHHA EVFFHGQLLK VDDDEAAFLG 240
DDGAACGGFF ADEHLPSLPW WAEPTEQWTT
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 33 | 40 | GGRGGGGG |
| 2 | 67 | 73 | ERKARLA |
| 3 | 90 | 98 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK068244 | 0.0 | AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence. |
| GenBank | AK106818 | 0.0 | AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence. |
| GenBank | CT829446 | 0.0 | CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence. |
