PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0154000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 454aa    MW: 48558.4 Da    PI: 10.5125
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0154000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.12e-31188287298
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                        ++ r+w+ +De+++L++li+++ak+g+   +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++   ++ +ksg++p++ +ehd++++e
  ORGLA08G0154000.1 188 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYE 279
                        578************************888999*************************************99899***************** PP

             DUF573  91 lskkiWgs 98 
                        lskk+Wg+
  ORGLA08G0154000.1 280 LSKKVWGT 287
                        ******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-28190286IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEASDGE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAPAF  120
DDGDDEGNAT PPPRSRRSSR VEATGVKPIS SRPMDASRRP AAASSQSQRR SKRPRSSPTQ  180
HSPEQHKRPP RVWNPQDEVT ILRALISYRA KNGALPGSSQ DTGKLHNMIR GQLSVKASTT  240
QLSDKVRRLK HKYNLILTRV TKSGRDPDLP TEHDREVYEL SKKVWGTKSG GAGAGSGGGG  300
GGGGGRVYEN AEVVQSDEEQ GSRDDSDEDM ESGWDDRDHR NRRLKAIVVA NGNGNAVTGG  360
RSVHGNGSGK GDVADKGKDM YPYLWEAVEE LSKEHPSGTA FRKAFGVLDG SRARAMEEKL  420
NRFRLSEIRQ QLRRMDLMKE TIKMVLDALE GSDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0154000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0STOREKEEPER protein
TrEMBLA0A0D3H1770.0A0A0D3H177_9ORYZ; Uncharacterized protein
TrEMBLI1QJD90.0I1QJD9_ORYGL; Uncharacterized protein
STRINGORGLA08G0154000.10.0(Oryza glaberrima)
STRINGORGLA09G0184000.10.0(Oryza glaberrima)
STRINGOBART08G17590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-15DNA-binding storekeeper protein-related transcriptional regulator