PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0139200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 359aa    MW: 37033.5 Da    PI: 7.867
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0139200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.94.9e-333692358
        ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                       +++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +e
  ORGLA08G0139200.1 36 AAVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLPE 92
                       679***************************99999******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-20789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.0E-283890IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4183990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-303989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.12E-16230301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28234302IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-21243299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAVVGVKYR PVVFPNGGAA AAAAGKSKAT PASATAAVYR ECLKNHAASL GGHAVDGCGE  60
FMPSPAADAA DPASLKCAAC GCHRNFHRRL PEAPPSPPLL ALPPPPPPPP PPPQPPQPQQ  120
HLPRTAAVAV APQLLLHGSH QRREQSPETD RVRGPGHHHD DDAAADDDDS EDSEMSDYDD  180
DRSASPLQAP PPVLCPGYLP SATHMLLSLG SASAPAVAAS RPHAAAAAMG PQPPPGAATS  240
ASRKRFRTKF SPEQKQRMQA LSERLGWRLQ KRDEAVVDEC CREIGVGKGV FKVWMHNNKH  300
NFLGGHSARR SAAAAAAAPL APPPVLTDFS INGSSTHAAA ADHAAATASG GGGGSPQST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-202433011775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0139200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047020.0AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03.
GenBankAP0051590.0AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648556.10.0zinc-finger homeodomain protein 10 isoform X1
RefseqXP_025875847.10.0zinc-finger homeodomain protein 10 isoform X2
SwissprotQ6Z5280.0ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLI1QIZ10.0I1QIZ1_ORYGL; Uncharacterized protein
STRINGORGLA08G0139200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-23homeobox protein 34