 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA08G0137200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 268aa MW: 27909.6 Da PI: 5.652 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA08G0137200.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 111.5 | 1.2e-34 | 89 | 207 | 3 | 122 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92
++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai+ lt +s +a ++ ++++++a++
ORGLA08G0137200.1 89 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAIDRLTLPDSADAAAApaF---AAAPPPADQHSSAMA 177
689**********************************************************9955555333221...111111222223334 PP
TCP 93 saakskksqksaasalnlakesrakarara 122
+aa s ++k +as ++ + s+a+ar r
ORGLA08G0137200.1 178 AAAASAAKEKGEASSSSTTNASSARARNRG 207
444555555555555666667777777664 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MSAPSSSSSP STLDEYDARF FFPGADVYTA GHRQDEETLE AVLRQPVTTT AAAAAAAAAA 60
AVEGGGGGGG GGAGGSPAAA AAATRRRPFR TDRHSKIRTA QGVRDRRMRL SVGVARDFFA 120
LQDKLGFDKA SRTVEWLLTQ SKHAIDRLTL PDSADAAAAP AFAAAPPPAD QHSSAMAAAA 180
ASAAKEKGEA SSSSTTNASS ARARNRGHDG SLPVAPMDER GRRGVELDWT AAAAASTEQP 240
MDGLEYYFQY YNHLEEIMSC DPTTTTDE
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
