PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0134400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 309aa    MW: 34238.9 Da    PI: 5.4021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0134400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.9e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+      G  +W+++++  g+ R++k+c++rw +yl
  ORGLA08G0134400.1 14 KGPWTAEEDQKLITFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding543.9e-1771111547
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +  E+++ vd+++qlG++ W++Ia++++ gRt++++k++w+++
  ORGLA08G0134400.1  71 SDAEEKIVVDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                        778***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-19562IPR009057Homeodomain-like
PROSITE profilePS5129413.843961IPR017930Myb domain
SuperFamilySSF466895.62E-2611108IPR009057Homeodomain-like
SMARTSM007173.1E-121363IPR001005SANT/Myb domain
PfamPF002498.2E-141461IPR001005SANT/Myb domain
CDDcd001673.71E-81661No hitNo description
PROSITE profilePS5129426.56762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2463117IPR009057Homeodomain-like
SMARTSM007174.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1471111IPR001005SANT/Myb domain
CDDcd001679.30E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLITFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEKIVVD LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHRPLQ PPPSPSPEKK HAERKNTAAA AAVAEQHQHD ELWEEESPGF CTDEVPMIHP  180
DEIMVPLRDH PPPVCTAAGA STPTTSSSSS SSSAASSTTS CDEVDAAALL PVLEWPDDAM  240
CLMELDELIA AAAPPSLLWD DDYRLPLPPP PPSPPAMYEE LDAFQCYDQQ RSAFEQEAAA  300
SAWNKLELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0134400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3110510.0AJ311051.1 Oryza sativa mRNA for Myb51 protein (myb51 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648743.10.0transcription factor MYB20
SwissprotQ9C7U73e-89MYB20_ARATH; Transcription factor MYB20
TrEMBLI1QIU30.0I1QIU3_ORYGL; Uncharacterized protein
STRINGORGLA08G0134400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.16e-90myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]