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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA08G0122300.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
LBD |
Protein Properties |
Length: 449aa MW: 48235 Da PI: 4.4313 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA08G0122300.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 125.2 | 3.3e-39 | 80 | 178 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++qle a
ORGLA08G0122300.1 80 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTA 171
7******************************************************************************************* PP
DUF260 93 elallke 99
el+++ +
ORGLA08G0122300.1 172 ELNTVLH 178
**98866 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MTSTTTNTTT TTTTNNNNNP VSTTTTTTAS HQRQSLPVAA RPPHSSGSGS GSGGSHRGAS 60 CGGSGGGGGG GGGGGGTNQA CAACKYQRRK CNPDCPMAPY FPADQQRRFL NAHRLFGVSN 120 ILKTLRHLKP ELCDDAMRTL IYQAEMRAHD PVGGCCRVIC DLERQLELDT AELNTVLHHL 180 AMCRQADAAG ASGSVAATLP AGVLEDACAD LDVTSSNQPL LLSAEHEVVD ALYANQEADA 240 AILHADGHHN QDESQREHHH GQPQQLYDYF YYDSTAGDDV SSKPNLDINV DGMQHFDFDT 300 NYDAEHKVEL TSDHQMPVGV DEHNQIDDKG FEIKSGPSLV DVFDLRQEEE QVQTVDVNTD 360 IEVKEMVDMN ADIDVKTMVD ENSNIDIIKT MVDVNADIVD VVKTVVDVNG DIGVKEELPE 420 LENGKIIAGD ATQMAESSHC RLGLGVSSF
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 63 | 76 | SGGGGGGGGGGGGT |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |