PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0080600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 786aa    MW: 86708.2 Da    PI: 8.1511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0080600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1963118257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk
  ORGLA08G0080600.1  63 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 118
                        6677899************************************************8 PP
2START105.96.7e-3427849825204
                        E...............EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
              START  25 s...............esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                                        es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ is+g    
  ORGLA08G0080600.1 278 KengllwlphmdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIISTGpsnl 367
                        3333333344477777999999999998553.3479999**************************.******99999*************** PP

                        ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCEEEEE CS
              START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksnghskvt 165
                          g lqlm aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng+skvt
  ORGLA08G0080600.1 368 hdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTILPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGYSKVT 459
                        *********************************************97666655543222333222233445999****************** PP

                        EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                        w+ h+ +++r ++ l++sl++s  a ga +wva lqr+ 
  ORGLA08G0080600.1 460 WMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 498
                        *************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1549101IPR009057Homeodomain-like
SuperFamilySSF466898.77E-1851120IPR009057Homeodomain-like
PROSITE profilePS5007115.74259119IPR001356Homeobox domain
SMARTSM003891.9E-1761123IPR001356Homeobox domain
CDDcd000864.54E-1862118No hitNo description
PfamPF000464.1E-1763118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-4102144IPR009057Homeodomain-like
PROSITE profilePS5084825.265245503IPR002913START domain
CDDcd088751.45E-91249499No hitNo description
SuperFamilySSF559611.65E-19249498No hitNo description
SMARTSM002345.0E-12254500IPR002913START domain
PfamPF018527.5E-27294498IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MDGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK  60
KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK  120
NNEERKLLQK ENEELKKENA ELRHRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS  180
NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA  240
NANDGYTEKN VLLDLANRAM EEFFSLMKEN ESLLVKKKEN GLLWLPHMDI LGVESLNYQE  300
YLAKSRTIGQ KPVDFKVVVT RDTAIVNGSC VDLVKSLLDA NRWRELFPGI VASANTTKII  360
STGPSNLHDG LLQLMRAELQ VMSPEVPVCD VTFLRQSVQF GSGLWCVVDV SIDTILPGES  420
KTAQSSVQTS STAARRMEVR LLPSGCVIEE MENGYSKVTW MVHAAYDERA VPVLYHSLLR  480
SAKALGACRW VASLQRHSQF LSGLHKYIFC PDSTMTEVVM RRKVLYLVKQ MTSSFTGLFA  540
SMSKATLQDG DDTHFAHQIV GGAAGEPAGL LLSATTTIWL PGVNPRRVYD HLRDEQCHGE  600
WRCLLGEQLH QGNALPYGAP LNGETVPEFY RMVNGLHEGH TISLISPREM GGNISNTLLL  660
QEARTDLSGS LIVYARTDVN TVHSIMNSGL NPATVFLVSS GCAILPDCLE SFPLHPAATA  720
DQAGTSSAAI ASRSETGGSF VTVTYQMFFS SQGGAAPASS SIHQGRDALK KATDIFKVVL  780
DTLTVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0080600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650915.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_015650916.10.0homeobox-leucine zipper protein ROC6-like isoform X1
TrEMBLI1QHA50.0I1QHA5_ORYGL; Uncharacterized protein
STRINGORGLA08G0080600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.13e-85protodermal factor 2