PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 284aa MW: 30239.6 Da PI: 6.8477

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA08G0063600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.4e-15	41	101	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++ ORGLA08G0063600.1 41 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 101 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.7	6e-34	40	102	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++ ORGLA08G0063600.1 40 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 102 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.64E-13	37	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.677	37	102	IPR001356	Homeobox domain
SMART	SM00389	9.9E-6	39	106	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	40	101	IPR009057	Homeodomain-like
Pfam	PF00046	2.4E-13	41	101	IPR001356	Homeobox domain
Gene3D	G3DSA:1.20.5.600	8.6E-4	102	138	IPR012897	Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006813	Biological Process	potassium ion transport
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0005249	Molecular Function	voltage-gated potassium channel activity
GO:0030955	Molecular Function	potassium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDRTATASWE VMSRRGEQQQ QLMMQAPASH NGGSGGGEPA RSRWAPKPEQ ILILESIFNS 60 GMVNPAKDET ARIRRLLERF GAVRDANVFY WFQNRRSRSR RRARQLQQAC GAALHQLPSA 120 AAAAGAGGGG DYYHHHHQPS SSPFLVHGGG GGGVVTSTTA APAVAASGHF LADEVDGGGD 180 DDLFAISRQM GLMARHGGGD HHYSSYADSD ATQLSYQPTG TIQVFINGVA YDVPSGGALD 240 MAGTFGRDAM LVHSSGEVLP VDEHGVLINS LQMGECYYLV SKSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA08G0063600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107305	0.0	AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649642.1	0.0	WUSCHEL-related homeobox 10
Swissprot	Q6Z3L4	0.0	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	I1QGT5	0.0	I1QGT5_ORYGL; Uncharacterized protein
STRING	ORGLA08G0063600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	3e-49	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]