PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0050000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 457aa    MW: 49871.4 Da    PI: 7.0742
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0050000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.29.2e-1562119259
                        --SS-EEEEEEE--TT-SS-EEE.EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsY.YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++Wr  Gq +++g  +p  + Y+C+ ++C v+k + rsa d++++e++ +g Hnh+
  ORGLA08G0050000.1  62 DDGFHWRMCGQSTIQGGLCPTVFsYQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 119
                        8*******************9988******************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.06E-1455120IPR003657WRKY domain
PROSITE profilePS5081112.356121IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-1357120IPR003657WRKY domain
SMARTSM007749.1E-761120IPR003657WRKY domain
PfamPF031061.8E-1362119IPR003657WRKY domain
PROSITE profilePS508089.943234293IPR003656Zinc finger, BED-type
SMARTSM006143.0E-16234285IPR003656Zinc finger, BED-type
SuperFamilySSF576673.09E-8237285No hitNo description
PfamPF028921.6E-6249292IPR003656Zinc finger, BED-type
SuperFamilySSF530981.59E-6370457IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MENQSGQPQY AMADQGFHPF SPFMLAPSTT MQQHVGSSSS TPVIQVAALP SHAYYGNIDV  60
ADDGFHWRMC GQSTIQGGLC PTVFSYQCAL PNCGVRKSIT RSADGQTIET VCKGCHNHPR  120
QSLRWLGDGS ERLEPISQEI VLLEASDASG AAGGPSVPGT GNGHGQSSGS SDSCRDDDGD  180
LGIDGNASVG DANAVKSGQV PAPAKEITVH SACEVDILNN NVRHENPQPR KKVRSKSTVW  240
EEFEVVLIDG KVQTAECKHC KKCLSAKTSG GTSHLIRHLK ICPAQHGTSR VQKKCSSLAD  300
LSIVKSWKDD QESSLDEIIR SIVSNLCPFS AMYSASFAQF LAGRNPVLNM VQQATVEEKF  360
LSVFHNEKMK LKEKITATPG GVFLSLGEWQ RLFYIQVRVA CLTVHFIDED WKINRKTIRC  420
SLSVFGKSDI LSLYPHWQSD IVHAEKVLKE VVQDWGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0050000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036960.0AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648158.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLI1QGE90.0I1QGE9_ORYGL; Uncharacterized protein
STRINGORGLA08G0050000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-13WRKY DNA-binding protein 33