PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0041400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 468aa    MW: 48045.1 Da    PI: 7.3439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0041400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000543623902154
                        HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          L++l+ +      +K + a++L +++eYIk L
  ORGLA08G0041400.1 362 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 390
                        5566666665.....89***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.194341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10352410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-4353394No hitNo description
Gene3DG3DSA:4.10.280.101.1E-7353412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYGGGGAAAG GATTTTGSHG GGGGDWWSAA VSSCSAPAPE TMQGFGGWSA AVVAVDGGGN  60
TSRSAAGNTA SSESPGSLAT GSSITFQEPA GGGVADPAAI AVHAQTVAGG GGGGWNQQPF  120
LDGSGFHGYM SSSRNDHHTN HHHHQINTPS LMSNSSSNNG VMLQEHQHDQ NYQFLSNLGF  180
ELLSSPTSPY GGGGGFRSSL LRSLTEPAAA AKPNDSPGFQ QYHHHQPAMN LQPPAAAAGR  240
EPLQFTNSTA APFWNPSSGF TVAAEGTALG GAGASPAQPT PASLAAKRAL EGVGDSSSII  300
TKKAKADSTP LKKSRTGTPS PLPTTFKACV YIYIIFNLSQ MVIDFLPIKF HVRKEKLGDR  360
VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP YLKNRQQVPH LKNSTGVDND  420
GGGGGEGTAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0041400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0D3GWZ00.0A0A0D3GWZ0_9ORYZ; Uncharacterized protein
STRINGOBART08G04820.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.17e-39bHLH family protein