PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA08G0041400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 468aa MW: 48045.1 Da PI: 7.3439 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00054 | 362 | 390 | 21 | 54 |
HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 L++l+ + +K + a++L +++eYIk L ORGLA08G0041400.1 362 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 390 5566666665.....89***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.194 | 341 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-10 | 352 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.10E-4 | 353 | 394 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 353 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MYGGGGAAAG GATTTTGSHG GGGGDWWSAA VSSCSAPAPE TMQGFGGWSA AVVAVDGGGN 60 TSRSAAGNTA SSESPGSLAT GSSITFQEPA GGGVADPAAI AVHAQTVAGG GGGGWNQQPF 120 LDGSGFHGYM SSSRNDHHTN HHHHQINTPS LMSNSSSNNG VMLQEHQHDQ NYQFLSNLGF 180 ELLSSPTSPY GGGGGFRSSL LRSLTEPAAA AKPNDSPGFQ QYHHHQPAMN LQPPAAAAGR 240 EPLQFTNSTA APFWNPSSGF TVAAEGTALG GAGASPAQPT PASLAAKRAL EGVGDSSSII 300 TKKAKADSTP LKKSRTGTPS PLPTTFKACV YIYIIFNLSQ MVIDFLPIKF HVRKEKLGDR 360 VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP YLKNRQQVPH LKNSTGVDND 420 GGGGGEGTAA SKRDLTGRGL CLVPISSTFA VASETPVDFW TPFGAAFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA08G0041400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648821.1 | 0.0 | transcription factor bHLH112 isoform X2 | ||||
TrEMBL | A0A0D3GWZ0 | 0.0 | A0A0D3GWZ0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G04820.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 7e-39 | bHLH family protein |