PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0040800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 398aa    MW: 43869.6 Da    PI: 6.864
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0040800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-1188124238
                        XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                        +++k +rr+++NReAAr+sR+RKka+i++Le+   +L
  ORGLA08G0040800.1  88 PRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMKL 124
                        57999*************************9854444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-487144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.53189131IPR004827Basic-leucine zipper domain
PfamPF001701.4E-889124IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-791137No hitNo description
Gene3DG3DSA:1.20.5.1706.0E-892137No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
PfamPF141447.0E-28176250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGIYDRRHHP LAAGVWGDHP FIRPDTTAST SNAAAAAMVV APPPLTEPKF ESQLALPLQH  60
GDDQDDAAAL QESPRHASDS FEQEASKPRD KIQRRLAQNR EAARKSRLRK KAYIQNLETS  120
RMKLAHLEQE ITRARQQSAY INRSSNPATL PAPIDSGVVT FEVEYAQWVE EQGRQTAELR  180
AALQAAAEGP ELRAVVEAAL AHYDRLFAAK REAARRDVFF VMSGVWRTGA ERFFLWIAGF  240
RPSEVIRVLA PQLEPMTERQ AADVQGLQQK ARHLEDALSQ GMDKLKQTLA DSLLAEAVVV  300
STSCDASPPP PPPEEEPSSS AAGDGGCYMA QMGSAMGRLS NLVAFVDHAD HLRQETLQNM  360
YKILTLPQAA RGLLALGDYC QRLRALSSLW AARPREPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0040800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315140.0CT831514.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883355.10.0transcription factor TGAL10-like isoform X3
RefseqXP_025883356.10.0transcription factor TGAL10-like isoform X3
SwissprotQ6ZBS80.0TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLI1QG570.0I1QG57_ORYGL; Uncharacterized protein
STRINGORGLA08G0040800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-111TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]