PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0016400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 749aa    MW: 80926.1 Da    PI: 6.3324
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0016400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.86e-2189144156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  ORGLA08G0016400.1  89 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 144
                        688999***********************************************999 PP
2START200.85.8e-632654911206
                        HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
              START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                        ela +a++el+++a+++ep+W      e + ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+t
  ORGLA08G0016400.1 265 ELAVAAMEELIRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAAT 355
                        57899********************99999*********998889*******************************.99999999999**** PP

                        EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EE.SSEEEEEEEECTCEE CS
              START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRael.lpSgiliepksnghs 162
                        lev+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d  +       ++  +R+++ +pSg+li++++ng+s
  ORGLA08G0016400.1 356 LEVLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGggcQPAAARGHRrRPSGCLIQEMPNGYS 447
                        **************************************************************9999********8537************** PP

                        EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        kvtwvehv+ +++++h+l++++v+sg+a+ga++wvatl+rqce+
  ORGLA08G0016400.1 448 KVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 491
                        ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-2375144IPR009057Homeodomain-like
SuperFamilySSF466892.34E-2076146IPR009057Homeodomain-like
PROSITE profilePS5007117.39486146IPR001356Homeobox domain
SMARTSM003891.1E-2087150IPR001356Homeobox domain
CDDcd000866.80E-2088147No hitNo description
PfamPF000462.3E-1889144IPR001356Homeobox domain
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PROSITE profilePS5084843.226256494IPR002913START domain
SuperFamilySSF559615.1E-34257493No hitNo description
CDDcd088751.01E-120260490No hitNo description
SMARTSM002341.0E-59265491IPR002913START domain
PfamPF018521.1E-52266491IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-5331490IPR023393START-like domain
SuperFamilySSF559614.85E-26511734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MQSLLDGHHH QLPSLLQQHH NGHHLLDQHQ QHQHQLPPQA TTTSESDGRA PRDELEMSKS  60
GGSDNLESGG GGGGGGSGDD QDPNQRPRKK RYHRHTQHQI QELEAFFKEC PHPDDKQRKE  120
LSRELGLEPL QVKFWFQNKR TQMKTQHERH ENNALRAENE KLRAENMRYK EALANASCPN  180
CGGPAAIGEM SFDEHHLRLE NARLRDEIDR ISAIAAKYVG KPAAAVSAAY PPLPPSNRSP  240
LDHMGIPGAG ADVFGADFDK PLVIELAVAA MEELIRMAQL GEPLWAPALG GEALGEEEYA  300
RTFPRGLGPK SPELRSEASR ETAVVIMNHV SLVEMLMDVG QWTALFSSIV SRAATLEVLS  360
TGVAGNHNGA LQLMSAEFQM PSPLVPTRET QFLRYCKQHP DGTWAVVDVS LDGLRAGAGG  420
GCQPAAARGH RRRPSGCLIQ EMPNGYSKVT WVEHVEADDQ MVHNLYKPVV NSGMAFGARR  480
WVATLERQCE RLASAMASNV ASSGDAGVIT TSEGRRSMLK LAERMVASFC GGVTASTTHQ  540
WTTLSGSGAE DVRVMTRKSV DDPGRPPGII LNAATSFWLP VPPSRVFDFL RDDSTRSEWD  600
ILSNGGVVQE MAHIANGRDH GNAVSLLRVN NANSNQSNML ILQECCTDAT GSYVIYAPVD  660
VVAMNVVLNG GDPDYVALLP SGFAILPDGP DGGGGSLLTV AFQILVDSVP TAKLSLGSVA  720
TVNSLIACTV ERIKAAITGD NGVAPPCPR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0016400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLI1QFG30.0I1QFG3_ORYGL; Uncharacterized protein
STRINGORGLA08G0016400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2