PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA07G0264000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 253aa MW: 26817.2 Da PI: 4.7336 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 108.5 | 4.6e-34 | 85 | 184 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89 lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q if ORGLA07G0264000.1 85 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIF 176 79************************99877778***************************************8889*************** PP DUF573 90 elskkiWg 97 e+++ iW+ ORGLA07G0264000.1 177 EIARNIWR 184 *******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.0E-31 | 86 | 183 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MLPAGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMTTPAA 60 AGGGSGSGSV GGVGSSSGGG ERRPLFQRLW TEEDEIVILR GFAEFTAARG TAFASHQYDT 120 DPFYEDMRGR LQLGFSKSQL VEKLRRLKRK YRNCVSRLRG SGSAFSFRSP HEQAIFEIAR 180 NIWRPTNKHG RDGDSDDEDA TQVTPAPVPV NTSPNDHNAN YSDNGGLGTP QIAGHATSAG 240 CFRCRQELLD ASV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA07G0264000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK068356 | 0.0 | AK068356.1 Oryza sativa Japonica Group cDNA clone:J013146D06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645065.1 | 1e-111 | probable transcription factor At5g28040 | ||||
TrEMBL | I1QEU8 | 0.0 | I1QEU8_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0264000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04930.2 | 7e-36 | DNA-binding storekeeper protein-related transcriptional regulator |