![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA07G0244600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 441aa MW: 47586.8 Da PI: 5.594 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361.2 | 1.5e-110 | 53 | 418 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf AL ar+++s + y+ l+ ++ + +s + a+++++ +sP++kf ORGLA07G0244600.1 53 LSLLLRCAEAVAMDQLPEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISGAFQAYNALSPLVKF 144 689******************************************************************999******************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 sh+taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasRp +p slRiTg+g+ s + le+tg+rLa+fA++lg+pfef+++ k ORGLA07G0244600.1 145 SHFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFRPIEGKI 232 ********************************************************....9**************************76665 PP GRAS 186 ledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 + + +L + gEa++V++++ h l+d ++s + +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l ++ ORGLA07G0244600.1 233 GHVADAAALLGPRhhGEATVVHWMH--HCLYDVTGSDAG----TVRLLKSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGA 317 555566666443358*********9..888888888888....**********************.899*******************5443 PP GRAS 276 pres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 ++++ er+ vEr+llg ei+n+va g +r+ + + +e+W + l++aGF+pv+l + a+qa+lll +++++gy++ ee+g+l lgWkd ORGLA07G0244600.1 318 GAAEeeaAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGCLKLGWKD 408 333323699***********************998887.9**************************************************** PP GRAS 365 rpLvsvSaWr 374 +L+++S+W+ ORGLA07G0244600.1 409 LSLLTASSWE 418 *********5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.638 | 26 | 398 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-108 | 53 | 418 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 441 aa Download sequence Send to blast |
MKAKRAADDE EEGGERERAR GKRLAAEGKQ GLVVVSTGEE EEAAAETRGL RLLSLLLRCA 60 EAVAMDQLPE ARDLLPEIAE LASPFGSSPE RVAAYFGDAL CARVLSSYLG AYSPLALRPL 120 AAAQSRRISG AFQAYNALSP LVKFSHFTAN QAIFQALDGE DRVHVIDLDI MQGLQWPGLF 180 HILASRPTKP RSLRITGLGA SLDVLEATGR RLADFAASLG LPFEFRPIEG KIGHVADAAA 240 LLGPRHHGEA TVVHWMHHCL YDVTGSDAGT VRLLKSLRPK LITIVEQDLG HSGDFLGRFV 300 EALHYYSALF DALGDGAGAA EEEAAERHAV ERQLLGAEIR NIVAVGGPKR TGEVRVERWG 360 DELRRAGFRP VTLAGSPAAQ ARLLLGMYPW KGYTLVEEDG CLKLGWKDLS LLTASSWEPT 420 DGDADADVAV AGDTHHESHD S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-156 | 58 | 419 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-156 | 58 | 419 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-156 | 58 | 419 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA07G0244600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003866 | 0.0 | AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644982.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-172 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A0E0I2G6 | 0.0 | A0A0E0I2G6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QA15 | 0.0 | A0A0E0QA15_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0X7S9 | 0.0 | A0A0P0X7S9_ORYSJ; Os07g0567700 protein | ||||
STRING | ORUFI07G19860.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS07T0567700-02 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G17430.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-155 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|