PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0156600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HRT-like

Protein Properties

Length: 622aa MW: 68702.6 Da PI: 9.7804

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0156600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.2	2.7e-18	311	340	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledGs C ++Pv+gRKRCe HKG+R ORGLA07G0156600.1 311 VCGVMLEDGSSCLDHPVQGRKRCELHKGRR 340 7****************************9 PP
2	HRT-like	52.7	7.1e-17	585	614	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+Ck+qP+ gRKRC+ HKG+R ORGLA07G0156600.1 585 ICGARASDGSPCKNQPIAGRKRCAMHKGQR 614 8****************************9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MPAASAAVPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HAAGKEGIQR YRVLNLPENF 60 PGLYELGVAR ASDEGIRAAR RWNGSGGGGV VVVYLGQADS VRARLQQYGR TGSHLDAGNP 120 PPSAGEAETN TRATGNGLFR EVFVRGYSLV FRCALMGNKQ EAEKTEARLL RVFDYAWNKL 180 QNGGLRREEI LIKLEQGAVN NRSSLLSRVR HFKQEVFREK AGIKISRNGS VDVSSGIMKN 240 MFPRIRTFVG FRPQLVNSGD NVDKEIGIRW KNTSEGNSYG KQARRSSEGY KVKRVNVIKR 300 RTMPEQDSND VCGVMLEDGS SCLDHPVQGR KRCELHKGRR LGRITVNPKG SSCSYSCQVE 360 IPVVESISPL TENESESDQA QQTSELLSKF LPATVKKSSR PWYSFEAKEI KTGEAPIEDG 420 KQETSEVIDI CEAKKSDNSA CTNKVISGSK KCQLHNGCKA KEFVSSRVID LLQNEEKVKS 480 MTVDKLSGEE ISHGKYQSQE NQPSGRMWFE LIKLQNPTST LSSKGQGRQK RVTGNVAAIC 540 EALTDNRCRE TIPMAGRERC DAHEGIKVTD ASSVPFSGSS GWPSICGARA SDGSPCKNQP 600 IAGRKRCAMH KGQRACRTPS ID

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MPAASAAVPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HAAGKEGIQR YRVLNLPENF  60
PGLYELGVAR ASDEGIRAAR RWNGSGGGGV VVVYLGQADS VRARLQQYGR TGSHLDAGNP  120
PPSAGEAETN TRATGNGLFR EVFVRGYSLV FRCALMGNKQ EAEKTEARLL RVFDYAWNKL  180
QNGGLRREEI LIKLEQGAVN NRSSLLSRVR HFKQEVFREK AGIKISRNGS VDVSSGIMKN  240
MFPRIRTFVG FRPQLVNSGD NVDKEIGIRW KNTSEGNSYG KQARRSSEGY KVKRVNVIKR  300
RTMPEQDSND VCGVMLEDGS SCLDHPVQGR KRCELHKGRR LGRITVNPKG SSCSYSCQVE  360
IPVVESISPL TENESESDQA QQTSELLSKF LPATVKKSSR PWYSFEAKEI KTGEAPIEDG  420
KQETSEVIDI CEAKKSDNSA CTNKVISGSK KCQLHNGCKA KEFVSSRVID LLQNEEKVKS  480
MTVDKLSGEE ISHGKYQSQE NQPSGRMWFE LIKLQNPTST LSSKGQGRQK RVTGNVAAIC  540
EALTDNRCRE TIPMAGRERC DAHEGIKVTD ASSVPFSGSS GWPSICGARA SDGSPCKNQP  600
IAGRKRCAMH KGQRACRTPS ID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0156600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102792	0.0	AK102792.1 Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644815.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	I1QBS4	0.0	I1QBS4_ORYGL; Uncharacterized protein
STRING	ORGLA07G0156600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-71	effector of transcription2