PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0152100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 896aa MW: 101273 Da PI: 7.2805

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0152100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.7e-27	109	196	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re+++ + ++++ +r+etr+gC a+++++++++gk+++t+++ +HnH+la ORGLA07G0152100.1 109 DFYNAYAEMVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKRGT-KEAKCPRPETRIGCPASMTIRLNTNGKYRLTEFVPNHNHQLA 196 6******************97766.************9988.99************************************97 PP
2	FAR1	83.9	2.7e-26	238	324	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a+++++++++gk++vt++++ HnH+l ORGLA07G0152100.1 238 EFYSMYAGKIGFNVRRASMTMN-AENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLTSNGKYHVTEFVTFHNHQL 324 6***************9999.5556************9998.99***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	109	196	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.5E-22	238	324	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-25	441	535	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.843	709	756	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-9	709	755	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-6	731	758	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MSSNSGGIAK EKDPENAPEL VALPLVRTLR PVHAVIDPAA DPRSAQLSWP GHVVLLPPYA 60 TWPHHVPTPP PAVNPDVAAA DVSPDVGCCD EKMLPKVDML FDGEKEAYDF YNAYAEMVGF 120 FVRRSTLWTT SKNIITRRTF VCSREGFREK KRGTKEAKCP RPETRIGCPA SMTIRLNTNG 180 KYRLTEFVPN HNHQLATAST MHMLKAKKIR LKARAARENL VDDTVRTPEF GSEDEAYEFY 240 SMYAGKIGFN VRRASMTMNA ENVITRRMFV CSKEGFREKK RGAKRVKKPR PETRTGCPAC 300 MVIRLTSNGK YHVTEFVTFH NHQLGATVPS DLVATSQSTE TGQDDGLDLV DGSADANIHR 360 QNLIIGNIMA TSLEGRSNKR FKCTKVPHYG DVGATLEYLQ KMQHDNPSFF FAVKSDDDGN 420 LTNFLWSDSK SIMDFVHFGD VVCLDSTYAL QGYGRPLALF TGVNHHKQTV IFAAALLYDE 480 SVEAFRWLFD TFKMAMNGTQ PKTLLTDRSD AISEGVAASW PATAHRYCVW QIYQNALQQL 540 SQAFHGSKTL DYCFQKCLFD CEDEPEFLTA WREMLEKYDL EDNQWLADLF SLKEKWALPY 600 GREAFCADMK SVQQKESLGT ELKKHLSLEF DLLSFFKQFE RVLCDRRSTE LQADVDASQS 660 TKKPPPMRVL RQASNIYTPA AFKMFEREFE LYMDCMLYNC GEMGTISEYR VVIEDNPKDH 720 FVKFDSLNSM VNCSCKGFEF VGIPCRHMLK VLDTRNIKDL PPQYFLKRWR KDAKSGSPNC 780 SYSFPLDGDP QLVQTKRYNL LCRMFSIAAA RAATSIETFA YMENQSSIFM DQVEQALQTR 840 PPDIAAMIGA HCDQTQNPID NIVAGGLHSH TNFINGPADG SLTFPFTLGA GVLDYR

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MSSNSGGIAK EKDPENAPEL VALPLVRTLR PVHAVIDPAA DPRSAQLSWP GHVVLLPPYA  60
TWPHHVPTPP PAVNPDVAAA DVSPDVGCCD EKMLPKVDML FDGEKEAYDF YNAYAEMVGF  120
FVRRSTLWTT SKNIITRRTF VCSREGFREK KRGTKEAKCP RPETRIGCPA SMTIRLNTNG  180
KYRLTEFVPN HNHQLATAST MHMLKAKKIR LKARAARENL VDDTVRTPEF GSEDEAYEFY  240
SMYAGKIGFN VRRASMTMNA ENVITRRMFV CSKEGFREKK RGAKRVKKPR PETRTGCPAC  300
MVIRLTSNGK YHVTEFVTFH NHQLGATVPS DLVATSQSTE TGQDDGLDLV DGSADANIHR  360
QNLIIGNIMA TSLEGRSNKR FKCTKVPHYG DVGATLEYLQ KMQHDNPSFF FAVKSDDDGN  420
LTNFLWSDSK SIMDFVHFGD VVCLDSTYAL QGYGRPLALF TGVNHHKQTV IFAAALLYDE  480
SVEAFRWLFD TFKMAMNGTQ PKTLLTDRSD AISEGVAASW PATAHRYCVW QIYQNALQQL  540
SQAFHGSKTL DYCFQKCLFD CEDEPEFLTA WREMLEKYDL EDNQWLADLF SLKEKWALPY  600
GREAFCADMK SVQQKESLGT ELKKHLSLEF DLLSFFKQFE RVLCDRRSTE LQADVDASQS  660
TKKPPPMRVL RQASNIYTPA AFKMFEREFE LYMDCMLYNC GEMGTISEYR VVIEDNPKDH  720
FVKFDSLNSM VNCSCKGFEF VGIPCRHMLK VLDTRNIKDL PPQYFLKRWR KDAKSGSPNC  780
SYSFPLDGDP QLVQTKRYNL LCRMFSIAAA RAATSIETFA YMENQSSIFM DQVEQALQTR  840
PPDIAAMIGA HCDQTQNPID NIVAGGLHSH TNFINGPADG SLTFPFTLGA GVLDYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0152100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067575	0.0	AK067575.1 Oryza sativa Japonica Group cDNA clone:J013110M05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882776.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	I1QBM9	0.0	I1QBM9_ORYGL; Uncharacterized protein
STRING	ORGLA07G0152100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1-related sequence 5