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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA07G0141300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26245.7 Da PI: 5.2076 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.2e-08 | 96 | 134 | 4 | 45 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 ++ rE+ RRd++N++f eL +l + + +K++K++iL ORGLA07G0141300.1 96 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILN 134 6789**********************9...9*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-9 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.32E-7 | 90 | 134 | No hit | No description |
PROSITE profile | PS50888 | 10.594 | 92 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-6 | 96 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-6 | 96 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MASPEGSTWV FDCPLMDDLA AAAGFDAAPA GGFYWTTPAP PQAALQPPPP QQQPVAPATA 60 APNACAEING SVDCEHGKEQ PTNKRPRSES GTRPSSKACR EKVRRDKLNE RFLELGAVLE 120 PGKTPKMDKS SILNDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA07G0141300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB110196 | 0.0 | AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047. | |||
GenBank | AB110223 | 0.0 | AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds. | |||
GenBank | AK058889 | 0.0 | AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence. | |||
GenBank | EU837260 | 0.0 | EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647705.1 | 5e-93 | transcription factor ILR3 | ||||
TrEMBL | A0A0D3GS30 | 1e-91 | A0A0D3GS30_9ORYZ; Uncharacterized protein | ||||
TrEMBL | Q7XXQ5 | 1e-91 | Q7XXQ5_ORYSJ; BHLH transcription factor | ||||
STRING | OS07T0543000-01 | 2e-92 | (Oryza sativa) | ||||
STRING | OBART07G17630.1 | 2e-92 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 9e-18 | bHLH family protein |