PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0123500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 855aa    MW: 94204.3 Da    PI: 7.2532
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0123500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.4e-2182178190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerr....traetrtgCkaklkvkkek.dgkwevtk 80 
                        +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk        +    +    + +  rtgC a+l++k+    + ++vt+
  ORGLA07G0123500.1  82 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeataA----SppppRCPDWRTGCLASLTIKLLPsANAFRVTD 168
                        6*****************99997666.****************999965544333....1455478899************99899****** PP

               FAR1  81 leleHnHela 90 
                        +  eHnH+la
  ORGLA07G0123500.1 169 FAAEHNHPLA 178
                        ********97 PP

2FAR171.22.5e-22226325290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k
  ORGLA07G0123500.1 226 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 315
                        9*************9976665..999**************9999999****999998877777778899*********************** PP

               FAR1  81 leleHnHela 90 
                        ++ eHnH+la
  ORGLA07G0123500.1 316 FVPEHNHPLA 325
                        ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1882178IPR004330FAR1 DNA binding domain
PfamPF031014.0E-19226325IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23414508IPR018289MULE transposase domain
PROSITE profilePS5096610.225682729IPR007527Zinc finger, SWIM-type
PfamPF044346.2E-6682728IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6704731IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MSTAADPSSL SGDSSPTSSG DAESSSSPSS SAAAAGGSDD PAPVDQVVAS GSGAGGDGDA  60
AAAVPTSPRI GMYFETEEDA YEFYKAYAAR LGFVVRKSNK SKNSRHTVTR RLFVCSKQGF  120
RQEPKKPPQD EATAASPPPP RCPDWRTGCL ASLTIKLLPS ANAFRVTDFA AEHNHPLASA  180
APAVSLALLP PSSSHHTIAA VASLPDPRDG PRTDMHFETE DDAYAFYNRY AEHVGFSVRR  240
SYKKRKRGVI VSRIFVCSRE GVSDRAKHES IAIVSNNAST GPSGTPRPGP PPTRTGCQAR  300
MVIKITPCRT YRVAKFVPEH NHPLANPDSV HKLRSHKMRA RAHELGAGEL HRRKHGKGVQ  360
LGDAGAVLEY LEELQVGNPS VYYAVGMGPD GKSAANFFWA DAKSMIDYRS FGDVVCFDTT  420
YELNGYGRPF ALFVGVDNHK QMLVFGAALL YDESIESLKW VFKAFADAMC GKQPDTVLID  480
ERPECAMAAA EVWPRSSHCT SVWHIYHNSK RHLKQVFEGS KSFANALSHC LFECDDEVEF  540
LSAWEKLIEK HDVGENEWLN KLFLEKEKWA LPYWRALFSA DILTTLRKDN MINDIKRELS  600
EQEDILQFLR RYETMLEEHR SKKLQADVDG SQVTLPIPSL RMLKQASSAY TPEAFKMFQG  660
EFEAYMNCMS FPCGGLGTIS EYKITLDEKP SESIVKFDAL DGSATCSCRK FESVGIQCCH  720
VLKVLDLKNI KELPEQYILR RWRKDARSVR IGEEPSGGSS SMRSASEVRF STMCRFLSLI  780
ASRAARSEEA TSYIESQSSV LLKHLDDILQ TGYPDIGNHV VASSSQPISF VGNQLPDHTS  840
QARGVPQTTN GLMGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0123500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647573.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1QAU30.0I1QAU3_ORYGL; Uncharacterized protein
STRINGORGLA07G0123500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5