PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA07G0123500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 855aa MW: 94204.3 Da PI: 7.2532 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.5 | 3.4e-21 | 82 | 178 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerr....traetrtgCkaklkvkkek.dgkwevtk 80 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk + + + + rtgC a+l++k+ + ++vt+ ORGLA07G0123500.1 82 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeataA----SppppRCPDWRTGCLASLTIKLLPsANAFRVTD 168 6*****************99997666.****************999965544333....1455478899************99899****** PP FAR1 81 leleHnHela 90 + eHnH+la ORGLA07G0123500.1 169 FAAEHNHPLA 178 ********97 PP | |||||||
2 | FAR1 | 71.2 | 2.5e-22 | 226 | 325 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k ORGLA07G0123500.1 226 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 315 9*************9976665..999**************9999999****999998877777778899*********************** PP FAR1 81 leleHnHela 90 ++ eHnH+la ORGLA07G0123500.1 316 FVPEHNHPLA 325 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-18 | 82 | 178 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 4.0E-19 | 226 | 325 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-23 | 414 | 508 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.225 | 682 | 729 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.2E-6 | 682 | 728 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-6 | 704 | 731 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MSTAADPSSL SGDSSPTSSG DAESSSSPSS SAAAAGGSDD PAPVDQVVAS GSGAGGDGDA 60 AAAVPTSPRI GMYFETEEDA YEFYKAYAAR LGFVVRKSNK SKNSRHTVTR RLFVCSKQGF 120 RQEPKKPPQD EATAASPPPP RCPDWRTGCL ASLTIKLLPS ANAFRVTDFA AEHNHPLASA 180 APAVSLALLP PSSSHHTIAA VASLPDPRDG PRTDMHFETE DDAYAFYNRY AEHVGFSVRR 240 SYKKRKRGVI VSRIFVCSRE GVSDRAKHES IAIVSNNAST GPSGTPRPGP PPTRTGCQAR 300 MVIKITPCRT YRVAKFVPEH NHPLANPDSV HKLRSHKMRA RAHELGAGEL HRRKHGKGVQ 360 LGDAGAVLEY LEELQVGNPS VYYAVGMGPD GKSAANFFWA DAKSMIDYRS FGDVVCFDTT 420 YELNGYGRPF ALFVGVDNHK QMLVFGAALL YDESIESLKW VFKAFADAMC GKQPDTVLID 480 ERPECAMAAA EVWPRSSHCT SVWHIYHNSK RHLKQVFEGS KSFANALSHC LFECDDEVEF 540 LSAWEKLIEK HDVGENEWLN KLFLEKEKWA LPYWRALFSA DILTTLRKDN MINDIKRELS 600 EQEDILQFLR RYETMLEEHR SKKLQADVDG SQVTLPIPSL RMLKQASSAY TPEAFKMFQG 660 EFEAYMNCMS FPCGGLGTIS EYKITLDEKP SESIVKFDAL DGSATCSCRK FESVGIQCCH 720 VLKVLDLKNI KELPEQYILR RWRKDARSVR IGEEPSGGSS SMRSASEVRF STMCRFLSLI 780 ASRAARSEEA TSYIESQSSV LLKHLDDILQ TGYPDIGNHV VASSSQPISF VGNQLPDHTS 840 QARGVPQTTN GLMGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA07G0123500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003956 | 0.0 | AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647573.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | I1QAU3 | 0.0 | I1QAU3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0123500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-83 | FAR1-related sequence 5 |