PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0051400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 256aa    MW: 27506.4 Da    PI: 8.4929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0051400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11138185455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  ORGLA07G0051400.1 138 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 185
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.00E-11132189No hitNo description
SuperFamilySSF474592.49E-18132202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-19134202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAPSLAAE LWRPHHHRHH LEASSVVTDQ GSGSRGGGGS GRRRPRRDAG PEDDDSSKVV  60
STSAASGGGG GGGGDSVAPE AKRLKPMKSS DKNDSLRTEA GTDSGNSSKA ADKNATPPEP  120
PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ASVLDEIINY  180
IQSLQHQVEF LSMKLEAVNS HMNNGIVAFP SKDFGAQPYN TAAGLTFDPQ TTREFAQGST  240
SEWLHMQIGN AYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA07G0051400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.11e-165transcription factor BHLH094-like
SwissprotQ69WS31e-166BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0D3GNA90.0A0A0D3GNA9_9ORYZ; Uncharacterized protein
TrEMBLI1Q8S20.0I1Q8S2_ORYGL; Uncharacterized protein
STRINGORGLA07G0051400.10.0(Oryza glaberrima)
STRINGOBART07G06150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-69BIG PETAL P