PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0042500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 372aa MW: 41547.2 Da PI: 4.424

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0042500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3e-35	53	144	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d+ ++ +sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++l ORGLA07G0042500.1 53 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANENFLRGQRHL 135 9**************************************************************999.........*********** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++ikr+k ORGLA07G0042500.1 136 LKNIKRRKP 144 ****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.18E-35	49	142	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-38	49	142	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.4E-61	49	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-31	53	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	53	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	92	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	104	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDDPMLNAVK EEESHGDGGG LEVVAGEDGA AAVAAGVAPR PMEGLHDAGP PPFLTKTYDM 60 VDDAGTDAAV SWSATSNSFV VWDPHAFATV LLPRFFKHNN FSSFVRQLNT YGFRKVDPDR 120 WEFANENFLR GQRHLLKNIK RRKPPSHTAS NQQSLGPYLE VGHFGYDAEI DRLKRDKQLL 180 MAEVVKLRQE QQNTKANLKA MEDRLQGTEQ RQQQMMAFLA RVMKNPEFLK QLMSQNEMRK 240 ELQDAISKKR RRRIDQGPEV DDVGTSSSIE QESPALFDPQ ESVEFLIDGI PSDLENSAMD 300 AGGLVEPQDF DVGASEEQQI GPQGELNDNF WEELLNEGLV GEENHNPVVE DDMNVLSEKM 360 GYLNSNGPTA GE

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDDPMLNAVK EEESHGDGGG LEVVAGEDGA AAVAAGVAPR PMEGLHDAGP PPFLTKTYDM  60
VDDAGTDAAV SWSATSNSFV VWDPHAFATV LLPRFFKHNN FSSFVRQLNT YGFRKVDPDR  120
WEFANENFLR GQRHLLKNIK RRKPPSHTAS NQQSLGPYLE VGHFGYDAEI DRLKRDKQLL  180
MAEVVKLRQE QQNTKANLKA MEDRLQGTEQ RQQQMMAFLA RVMKNPEFLK QLMSQNEMRK  240
ELQDAISKKR RRRIDQGPEV DDVGTSSSIE QESPALFDPQ ESVEFLIDGI PSDLENSAMD  300
AGGLVEPQDF DVGASEEQQI GPQGELNDNF WEELLNEGLV GEENHNPVVE DDMNVLSEKM  360
GYLNSNGPTA GE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-26	48	142	21	129	Heat shock factor protein 1
5d5v_B	1e-26	48	142	21	129	Heat shock factor protein 1
5d5v_D	1e-26	48	142	21	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	LKNIKRR
2	247	252	KKRRRR
3	248	253	KRRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0042500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM409186	0.0	AM409186.1 Oryza sativa Indica Group mRNA for heat shock factor A2b (hsfA2b gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645272.1	0.0	heat stress transcription factor A-2b
Swissprot	Q6VBB2	0.0	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	I1Q8I3	0.0	I1Q8I3_ORYGL; Uncharacterized protein
STRING	ORGLA07G0042500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-105	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]