PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA07G0042500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 372aa MW: 41547.2 Da PI: 4.424 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.4 | 3e-35 | 53 | 144 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d+ ++ +sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++l ORGLA07G0042500.1 53 FLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANENFLRGQRHL 135 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++ikr+k ORGLA07G0042500.1 136 LKNIKRRKP 144 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.18E-35 | 49 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-38 | 49 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.4E-61 | 49 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-31 | 53 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 53 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 92 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 104 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDDPMLNAVK EEESHGDGGG LEVVAGEDGA AAVAAGVAPR PMEGLHDAGP PPFLTKTYDM 60 VDDAGTDAAV SWSATSNSFV VWDPHAFATV LLPRFFKHNN FSSFVRQLNT YGFRKVDPDR 120 WEFANENFLR GQRHLLKNIK RRKPPSHTAS NQQSLGPYLE VGHFGYDAEI DRLKRDKQLL 180 MAEVVKLRQE QQNTKANLKA MEDRLQGTEQ RQQQMMAFLA RVMKNPEFLK QLMSQNEMRK 240 ELQDAISKKR RRRIDQGPEV DDVGTSSSIE QESPALFDPQ ESVEFLIDGI PSDLENSAMD 300 AGGLVEPQDF DVGASEEQQI GPQGELNDNF WEELLNEGLV GEENHNPVVE DDMNVLSEKM 360 GYLNSNGPTA GE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-26 | 48 | 142 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-26 | 48 | 142 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-26 | 48 | 142 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | LKNIKRR |
2 | 247 | 252 | KKRRRR |
3 | 248 | 253 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA07G0042500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM409186 | 0.0 | AM409186.1 Oryza sativa Indica Group mRNA for heat shock factor A2b (hsfA2b gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645272.1 | 0.0 | heat stress transcription factor A-2b | ||||
Swissprot | Q6VBB2 | 0.0 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | I1Q8I3 | 0.0 | I1Q8I3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0042500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-105 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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