PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA07G0041600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 782aa MW: 84127.7 Da PI: 6.4982

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA07G0041600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.2	5e-16	466	504	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk ORGLA07G0041600.1 466 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 504 589**********************************96 PP
2	TCR	50.9	3.1e-16	552	591	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ ORGLA07G0041600.1 552 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 591 589***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.8E-17	465	506	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.33	466	592	IPR005172	CRC domain
Pfam	PF03638	8.8E-12	468	503	IPR005172	CRC domain
SMART	SM01114	1.7E-17	552	593	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.1E-12	554	590	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MDTPDRAAAA APAADSPLFS FIDSLSPIEP LKSTYSASSI QAYQSLNITS ISSIFTSPHD 60 NAQKESKLSK SSFAEFSESE VCADESDKNK PSKSSNAVRL FACTSTLTQA THKITSSVSE 120 GTVGPPEGSN DLPQPGQFDS GSPDHNTTPC HGVRSDLKQG KCRKLQAFQT AKTNTSEKRK 180 CLFSTEVQLM DGCQPEKLND EILGCDWDDL ISATSGELIA YDEDHKGVQL AVSNSESCGF 240 LLSKLTGDGD ISDRTHPSSS TQTYYRELLM DEDQTENAQL VPDGEKNIST EEIQDNLYEA 300 NGSIPTGYKV ETQQQRGMRR RCLVFEAAGY SNRIVQKESV MDLSVSTCKG KSPVQNHSNP 360 GKTPSPRVLR GIGLHLNALA LTSKDKMICQ DPMSSLVLSS ATQQEAHGKM LSAGENFIHP 420 GGELLELQMD DDCSAGVFLG NDHDSSQSNS PQKKRRKSDN GDDGEACKRC SCKKSKCLKL 480 YCECFAAGVY CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI RMSDAGQDIT 540 GEDPNNTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSS NCRCEGCKNT FGKRDAAVST 600 EAEEMKQGGE EAENCGKEKE NDLQKANAQS EDHPFLELVP ITPPFDVSSS LLKPPNFSSA 660 KPPRPTKARS NSSRSSSKAP GAVHSQKFSK IANSGLNEEM PDILRDDASP GNCVKTSSPN 720 GKRVSPPHNA LSVSPSRKGG RKLILKSIPS FPSLIGDASS GSSMNSTESA FNTASPLALG 780 PS

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MDTPDRAAAA APAADSPLFS FIDSLSPIEP LKSTYSASSI QAYQSLNITS ISSIFTSPHD  60
NAQKESKLSK SSFAEFSESE VCADESDKNK PSKSSNAVRL FACTSTLTQA THKITSSVSE  120
GTVGPPEGSN DLPQPGQFDS GSPDHNTTPC HGVRSDLKQG KCRKLQAFQT AKTNTSEKRK  180
CLFSTEVQLM DGCQPEKLND EILGCDWDDL ISATSGELIA YDEDHKGVQL AVSNSESCGF  240
LLSKLTGDGD ISDRTHPSSS TQTYYRELLM DEDQTENAQL VPDGEKNIST EEIQDNLYEA  300
NGSIPTGYKV ETQQQRGMRR RCLVFEAAGY SNRIVQKESV MDLSVSTCKG KSPVQNHSNP  360
GKTPSPRVLR GIGLHLNALA LTSKDKMICQ DPMSSLVLSS ATQQEAHGKM LSAGENFIHP  420
GGELLELQMD DDCSAGVFLG NDHDSSQSNS PQKKRRKSDN GDDGEACKRC SCKKSKCLKL  480
YCECFAAGVY CSEPCSCQGC LNKPIHEEIV LSTRKQIEFR NPLAFAPKVI RMSDAGQDIT  540
GEDPNNTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSS NCRCEGCKNT FGKRDAAVST  600
EAEEMKQGGE EAENCGKEKE NDLQKANAQS EDHPFLELVP ITPPFDVSSS LLKPPNFSSA  660
KPPRPTKARS NSSRSSSKAP GAVHSQKFSK IANSGLNEEM PDILRDDASP GNCVKTSSPN  720
GKRVSPPHNA LSVSPSRKGG RKLILKSIPS FPSLIGDASS GSSMNSTESA FNTASPLALG  780
PS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	468	589	12	120	Protein lin-54 homolog
5fd3_B	1e-16	468	589	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	452	456	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA07G0041600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065897	0.0	AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646690.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	I1Q8H4	0.0	I1Q8H4_ORYGL; Uncharacterized protein
STRING	ORGLA07G0041600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-83	TESMIN/TSO1-like CXC 2