PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0286200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 506aa    MW: 54366.1 Da    PI: 7.9196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0286200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.5e-18221270255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  ORGLA06G0286200.1 221 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 270
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-19216287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-24217290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-16217274No hitNo description
PROSITE profilePS5088816.952219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-15221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP  60
APPPTSQLQQ QQQQAFPGGI GTFSISHVAG ARPVAAAVVK AEPTPFVLWG QPAAAAAAHP  120
VAALGHHHHH HQQWTLPFAG VGQVAATAAR QQQERKGRVG GGGFMDSGSR SSGGAGFDDD  180
DGVAARREVS SSLKAELTVR VDGKGGSCSG SGTDQRPSSP RSKHSATEQR RRSKINDRFQ  240
ILRELLPHSD QKRDKATFLL EVIEYIRFLQ EKVQKFEASV PEWNQENAKI LPWSNIYFRS  300
FWKNSQSKGQ NPGDDLPDPS QFIRNGSSSG YNFTGKPDDN HNMVTSAAAS GAQELVETDH  360
AASVSYRSAE TPTNITNNVT SRAQAQWASP AGVDDCAMNS EMLNNQQLAI DEGTISLSSQ  420
YSQQLLGTLT HALESSGVDL SQASISVQIN LGKRAVKRPG ADGSSSSKEL PSTSANNENM  480
GHQLTMLGGG TEELPYPTKR HKSGNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0286200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0transcription factor BIM3 isoform X1
TrEMBLI1Q6U90.0I1Q6U9_ORYGL; Uncharacterized protein
STRINGORGLA06G0286200.10.0(Oryza glaberrima)
STRINGORGLA09G0105800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-53BES1-interacting Myc-like protein 2