PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0284700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 430aa MW: 49457.6 Da PI: 7.0226 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75 | 1.5e-23 | 88 | 179 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+e+GFs+r+s+ ++ +++ i++rtf+Cs+eg+r +k++ ++ +r+etr++C+a++k+++ dg ++v++++ eH+H l ORGLA06G0284700.1 88 DFYNAYASEIGFSIRRSSYHYMGNTKIIKNRTFCCSREGTRGVDKRTealGYGNSFNRPETRCKCQACMKISLI-DGFYQVYHFVPEHSHIL 178 6****************************************999999666567788******************.***************99 PP FAR1 90 a 90 + ORGLA06G0284700.1 179 T 179 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-17 | 88 | 179 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MPNNSMIPPS EASQLHDAGA SPMFLDNTSA ATTSFTNLVE PDDSSAGLGM KQIETDQGAN 60 EDSQTRKGSE KMTPKVGMKF NSEQEAYDFY NAYASEIGFS IRRSSYHYMG NTKIIKNRTF 120 CCSREGTRGV DKRTEALGYG NSFNRPETRC KCQACMKISL IDGFYQVYHF VPEHSHILTT 180 KSQAHQLRSQ RKVNEAQVAS VEVAKSVGIS TKAAVDLLAK QSCGYENLGF TRVDMKNKLY 240 SKRSLQTKQE EEEEFIKAWH QLLDKYELQQ NKWLQQIFDK RHQWALVYGR NTFSADMSTT 300 QRNESFNNEL KGYISVKYDM LTFFEHFDRL LGDKRYEEVK CDFRATQSTP RPKAELRILR 360 DVVEVYTPAV YKIFEEEVML TLNCDIFYCG DVDEQKVYKI KSHEDIEKWL KIRCNPDLET 420 SSSPQGVKEN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0284700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004381 | 0.0 | AP004381.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0025F03. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I1Q6T4 | 0.0 | I1Q6T4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0284700.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-25 | FAR1-related sequence 5 |