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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0244900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 31263.2 Da PI: 5.8095 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 144 | 188 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L ORGLA06G0244900.1 144 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 188 99***********************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-15 | 137 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.97E-10 | 137 | 193 | No hit | No description |
PROSITE profile | PS50888 | 15.77 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-14 | 141 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-6 | 144 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG 60 KRLGVGDDAE GGGSKADRET VQLTGLFPPV FGGGGVQPPN LRPTPPTQVF HPQQSKQGGA 120 AVGPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERMR ALQELVPNTN KTDRAAMLDE 180 ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADIPLSVKGE ASDSGGNQQI WEKWSTDGTE 240 RQVAKLMEED IGAAMQFLQS KALCMMPISL AMAIYDTQQT QDGQPVKHEP NTPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0244900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104412 | 0.0 | AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633087.1 | 0.0 | transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 2e-74 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0D9ZEF5 | 0.0 | A0A0D9ZEF5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0D876 | 0.0 | A0A0E0D876_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GUY7 | 0.0 | A0A0E0GUY7_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8ALB2 | 0.0 | B8ALB2_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1Q5N6 | 0.0 | I1Q5N6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q7Y1H4 | 0.0 | Q7Y1H4_ORYSJ; Lipoamide dehydrogenase, putative, expressed | ||||
STRING | OGLUM03G37150.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS03T0797600-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA06G0244900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 5e-54 | bHLH family protein |
Publications ? help Back to Top | |||
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