PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA06G0227100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 451aa MW: 50593.4 Da PI: 7.6812

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0227100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.8	1.8e-23	52	148	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++ + k+rr+r r gC a+ +v+k++ +w+vtk++ + ORGLA06G0227100.1 52 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAH 143 6****************************************99999999999999999**************99******** PP FAR1 85 HnHel 89 H H++ ORGLA06G0227100.1 144 HVHPV 148 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-21	52	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-26	271	361	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEGHRRGEAD DEEEELGLRL GLASAGASAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR 60 AGFAVRTDKS RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC 120 MAMCEVTKKE PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA 180 TEPSDEPTGA PAAVGNGAPN GGPSFCNRLV RANPAGVRAE VQDLLDYLRK MQAESPGFFY 240 AMQVDSGNCV TNVFWADAKA RMAYKSFGDA VTFDTTYRKT KYMMPFAVFR GINHHLQGII 300 FGCCLLMDET KSSYTWLFDT WLAAMGGRQP DLLVTDQGKA MEAGIARVLP NTRHRFCQRN 360 ILSLCKQKLS AVYIQHINLK ADLRECVFGA ETIEEFQARW DYVIHKYNLE ENTWLQSLYD 420 TRQQWAWVYQ KGSFFPELLK SQRSERLNKF F

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEGHRRGEAD DEEEELGLRL GLASAGASAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR  60
AGFAVRTDKS RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC  120
MAMCEVTKKE PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA  180
TEPSDEPTGA PAAVGNGAPN GGPSFCNRLV RANPAGVRAE VQDLLDYLRK MQAESPGFFY  240
AMQVDSGNCV TNVFWADAKA RMAYKSFGDA VTFDTTYRKT KYMMPFAVFR GINHHLQGII  300
FGCCLLMDET KSSYTWLFDT WLAAMGGRQP DLLVTDQGKA MEAGIARVLP NTRHRFCQRN  360
ILSLCKQKLS AVYIQHINLK ADLRECVFGA ETIEEFQARW DYVIHKYNLE ENTWLQSLYD  420
TRQQWAWVYQ KGSFFPELLK SQRSERLNKF F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0227100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003634	0.0	AP003634.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0655A07.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641723.1	0.0	protein FAR1-RELATED SEQUENCE 9
TrEMBL	I1Q558	0.0	I1Q558_ORYGL; Uncharacterized protein
STRING	ORGLA06G0227100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-90	FAR1-related sequence 5