 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA06G0191100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
WRKY |
| Protein Properties |
Length: 393aa MW: 42359.9 Da PI: 9.7717 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA06G0191100.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 94.9 | 5.8e-30 | 247 | 306 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsa+d++v++ tYegeHnh
ORGLA06G0191100.1 247 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTVLVATYEGEHNHA 306
58***************************99****************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MAKMLPPPSQ SVSSRPPSWL YIPPRRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQCIQFM 60
DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SFKKDHEVEA LEAELRRASE 120
ENKKLTEMLR AVVAKYTELQ GQVNDMMSAA AVNAGNHQSS TSEGGSVSPS RKRIRSVDSL 180
DDAAHHRKPS PPFVAAAAAA AYASPDQMEC TSAAAAAAAK RVVREDCKPK VSKRFVHADP 240
SDLSLVVKDG YQWRKYGQKV TKDNPCPRAY FRCSFAPACP VKKKVQRSAD DNTVLVATYE 300
GEHNHAQPPH HDAGSKTAAA AKHSQHQPPP SAAAAVVRQQ QEQAAAAGPS TEVAARKNLA 360
EQMAATLTRD PGFKAALVTA LSGRILELSP TKN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK106282 | 0.0 | AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Zhang Y,Wang L
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
BMC Evol. Biol., 2005. 5: p. 1
[PMID:15629062] - Wu KL,Guo ZJ,Wang HH,Li J
The WRKY family of transcription factors in rice and Arabidopsis and their origins.
DNA Res., 2005. 12(1): p. 9-26
[PMID:16106749] - Berri S, et al.
Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
BMC Plant Biol., 2009. 9: p. 120
[PMID:19772648] - Delteil A, et al.
Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.
Mol. Plant Pathol., 2012. 13(1): p. 72-82
[PMID:21726398] - Peng Y,Bartley LE,Canlas P,Ronald PC
OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
Rice (N Y), 2010. 3(1): p. 36-42
[PMID:21961049] - Chujo T, et al.
OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
Plant Mol. Biol., 2013. 82(1-2): p. 23-37
[PMID:23462973] - Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly.
PLoS ONE, 2013. 8(4): p. e62460
[PMID:23638091]
|
