PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0183200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 389aa    MW: 40631.9 Da    PI: 9.6644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0183200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.9e-14103155255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G r ++ +g+++AeIr     +   ++ r++lg+fgtaeeAa a++ a+  ++g
  ORGLA06G0183200.1 103 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFGTAEEAAWAYDTAATVIHG 155
                        8********.**********5...445588*********************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-24102164IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-17103163IPR016177DNA-binding domain
CDDcd000181.78E-23103163No hitNo description
SMARTSM003801.8E-24103169IPR001471AP2/ERF domain
PROSITE profilePS5103220.495103163IPR001471AP2/ERF domain
PfamPF008472.3E-8103151IPR001471AP2/ERF domain
PRINTSPR003672.5E-9104115IPR001471AP2/ERF domain
PRINTSPR003672.5E-9129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGKPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAAEAEGF  60
AAANGEGWVA PAVEGEGEGF VGAPVVEGEE GLTAELPVAA ERKYRGARKR PWGKYAAEIR  120
IRNTMGVKER VWLGTFGTAE EAAWAYDTAA TVIHGDKATT NFPRAPLRPA TTPVMRSMLV  180
FFGIAHLVRS LVPRARGPRG RGGGAGGRGR SRRRRAAAAA APSAPASEAP PPPPPPSSAL  240
VPEPELQVQG GRGERGRGRG RRRGGGRRGR RGRGRTPARV VAEDSPMLQA TTPAAAPALA  300
PAPANQAIFQ PMIIPPGGGV VAPDDFLLSA ISDDEPVLPH KKPKLLGVYT PPDSPDQFVM  360
EFFADLGDGD DILSSSFWQD PAGDGEDTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1698163872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0183200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053860.0AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1Q3W90.0I1Q3W9_ORYGL; Uncharacterized protein
STRINGORGLA06G0183200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1823699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-12ERF family protein