PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0166100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 669aa    MW: 76901.3 Da    PI: 7.8515
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0166100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.78.4e-2380170289
               FAR1   2 fYneYAkevGFsvrkskskkskrnge..itkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fYn+YA ++GF +r+++s++++r+g    ++++fvC keg++++++ + ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H +
  ORGLA06G0166100.1  80 FYNAYALRLGFGIRVARSRSERRKGVelLIMKRFVCLKEGHHKKKDAEpSDKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLVLEHTHVI 170
                        9**************999999776542389************9999987899999**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2080170IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26258349IPR018289MULE transposase domain
PROSITE profilePS509669.26542574IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-7544572IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEYTSSEDDE LVEGYMDVED DTGTSNTDQG TGLMPSEMRS IRPRPSSVGN GRLMAADGLG  60
TNDDPCLGME FESDGAARAF YNAYALRLGF GIRVARSRSE RRKGVELLIM KRFVCLKEGH  120
HKKKDAEPSD KKKRKRLSIR DGCPAMMEVV RRGPEKWVIT KLVLEHTHVI LSPDRVREVQ  180
LRRLSGKCAE HDNQLQELRR NVFGDTDAQG LFNYLKRMQS ENSGFFYSIQ VDSKNCVSNA  240
VWADARARMS YTYFGDAVYF DTTYSKNENM LPFAAFTGVN HHGDTVPFGC ALVLDRTESS  300
YTWLFETWLT AVGRRLPFSF TTDEGKAIAS AVAKVFPQCF HRLCRWRILS RCKKKLSDDY  360
VRFPNLHDEL RRCINECYTE VAFDMFWGTI LDKYGLRENS WLRSIFEARH RWVPAYLTTS  420
SFFAELTLTQ RGETIGRFFR NNFSTRVPLD EFTTKFDQHI DNLYVHETQK DLGSSHPEQI  480
LKTNIALEKQ ARSIYTNAVF EIFQTELFEA LQHYAVKVHQ DGPYSKYYVD RDDPPTRHTV  540
FYNVAEKKAW CDCCRYAFSA ILCRHVLGVF ILAGIMVLPE TCIAKRWTKR AKTGPELIGH  600
NLENGNCYMD SSTSRYNDLI HDAIKCAEKG AVSADNFRVA KEILRKAFME IKCLGEKLTD  660
DDLQQVDSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121135KKKDAEPSDKKKRKR
2129136DKKKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0166100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200830.0AK120083.1 Oryza sativa Japonica Group cDNA clone:J013014J20, full insert sequence.
GenBankAP0036230.0AP003623.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0642B07.
GenBankAP0042360.0AP004236.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0417D05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641232.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_025882193.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1Q3E80.0I1Q3E8_ORYGL; Uncharacterized protein
STRINGORGLA06G0166100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5