PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0155700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 324aa    MW: 35495.8 Da    PI: 4.7811
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0155700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.52.7e-30391312102
                        HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa  +Lp +Fkh +f+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++
  ORGLA06G0155700.1  39 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAAGLLPLHFKHAKFSSFLRQLNTYGFRKVSADR---------WEFSNEDFLGGQRH 121
                        9********************9899******************************************99.........************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkks 102
                        ll +i+r+++
  ORGLA06G0155700.1 122 LLANIRRRRR 131
                        *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.98E-2935129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-4935129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3236129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-2639129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-153962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-157890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1591103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDYSTVKQEE VEVVVLDGEE EAAAPLPAAM GVGAAVAPFL VKTFEMVEDP ATDAVVSWGG  60
AARNSFVVWD PHAFAAGLLP LHFKHAKFSS FLRQLNTYGF RKVSADRWEF SNEDFLGGQR  120
HLLANIRRRR RGAGTGSTTP RAVNCGGGGG EGEVERLRRD KEALARELAR LRRQQQEARA  180
QLLDMERRVR GTERRQEQCT AFLARALRSP DVLHNIARRH AAAAPVEGKK RRMLADDDDG  240
LTFEALALAA AADTSHSTGG AVITDMIWYE LLGEEQAEID IEVDQLVAAA AANTASEAEP  300
WEEMGEEEVQ ELVQQIDCLA SPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-193012916129Heat shock factor protein 1
5d5v_B2e-193012916129Heat shock factor protein 1
5d5v_D2e-193012916129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0155700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881831.11e-157putative heat stress transcription factor A-6a
RefseqXP_025881832.11e-157putative heat stress transcription factor A-6a
RefseqXP_025881833.11e-157putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-158HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLI1Q3440.0I1Q344_ORYGL; Uncharacterized protein
STRINGORGLA06G0155700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.12e-47heat shock transcription factor A7A