PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0151200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 355aa    MW: 37379.3 Da    PI: 8.5681
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0151200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822207.53.7e-64151642149
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspe 91 
                        g++r ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+++ +g+sas sp+
  ORGLA06G0151200.1  15 GGTRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGFKPPqaERPDPIGRSASPSPC 106
                        789***********************************************************************99999************* PP

             DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvsss 149
                        ss+q        +sp++sy++sp+sssfps+ s+++i++  +        +sl+p+l++l+l+ss 
  ORGLA06G0151200.1 107 SSYQ--------PSPRASYNPSPASSSFPSSGSSSHITIGGNsliggvegSSLIPWLKTLPLSSSY 164
                        ****........***************************98899*****99*******99986664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.1E-6915158IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTNGAGGGGG GGGLGGTRVP TWRERENNRR RERRRRAIAA KIYAGLRAYG NYNLPKHCDN  60
NEVLKALCNE AGWTVEPDGT TYRKGFKPPQ AERPDPIGRS ASPSPCSSYQ PSPRASYNPS  120
PASSSFPSSG SSSHITIGGN SLIGGVEGSS LIPWLKTLPL SSSYASSSKF PQLHHLYFNG  180
GSISAPVTPP SSSPTRTPRL RTDWENASVQ PPWASANYTS LPNSTPPSPG HKIAPDPAWL  240
AGFQISSAGP SSPTYNLVSP NPFGIFKEAI ASTSRVCTPG QSGTCSPVMG GMPAHHDVQM  300
VDGAPDDFAF GSSSNGNNES PGLVKAWEGE RIHEECASDE LELTLGSSKT RADPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-231888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-231888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-231888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-231888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0151200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012290.0AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641160.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLI1Q2Z90.0I1Q2Z9_ORYGL; Uncharacterized protein
STRINGORGLA06G0151200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-64BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]