PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0121500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 223aa MW: 23681.1 Da PI: 7.5633 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 33.5 | 1e-10 | 101 | 120 | 34 | 53 |
ZF-HD_dimer 34 eegtaaalkCaACgCHRnFH 53 e +++++lkCaACgCHRnFH ORGLA06G0121500.1 101 EPADPTSLKCAACGCHRNFH 120 44789*************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-4 | 99 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-8 | 99 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
XSXACLRQRQ QQQPTAAVAA AASMASARLH ASAQPAASSL ETWLRWSLCR LYPSVATAAT 60 STAGGGRRRD GVPGVPQEPR SEPGRTRAGR LRGVHAVVAG EPADPTSLKC AACGCHRNFH 120 CWLLEGSPPP PPPLALPAPP MPANVLHGQL HREEETPEVR LPGVDGDEFD NNSDGSEYYD 180 ERSVSPPSPP HLPAAVVHQP YYPSAQHMLL SLGSSGQAQR LPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0121500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005449 | 0.0 | AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610599.1 | 1e-22 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 1e-23 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | I1Q252 | 1e-156 | I1Q252_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0121500.1 | 1e-157 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21657 | 5 | 5 |