PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 265aa MW: 29322.2 Da PI: 5.0495

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA06G0093500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +G +W+ +++ g+ R++k+c++rw +yl ORGLA06G0093500.1 14 KGPWTAEEDQKLVAFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.4	6.1e-17	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +E+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++ ORGLA06G0093500.1 71 SDDEERLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 899*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-21	5	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.227	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.0E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-9	16	61	No hit	No description
PROSITE profile	PS51294	27.503	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-24	63	116	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-15	66	114	IPR001005	SANT/Myb domain
CDD	cd00167	5.93E-12	71	112	No hit	No description
Pfam	PF00249	1.1E-14	71	111	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVAFLL THGHCCWRVV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDDEERLVID LHAQLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPVTHQPLE PPRPPPREQD ATPPPPPPPP PPQEIEESEE EEQEPSPLIE PHEITAPPPA 180 AAAEAATSNC SVSPASVLSP SCSSSASAAS AVDVAEWPEP MYMFGMDGIM DVGWNGLISG 240 AGVDVDPFDH YYHDASFDDQ DVWII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA06G0093500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107483	0.0	AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence.
GenBank	FJ940217	0.0	FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655982.1	1e-143	PREDICTED: myb-related protein 308-like
Swissprot	Q9C7U7	1e-84	MYB20_ARATH; Transcription factor MYB20
TrEMBL	I1Q1C2	0.0	I1Q1C2_ORYGL; Uncharacterized protein
STRING	ORGLA06G0093500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	6e-82	myb domain protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]