 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA06G0066200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 232aa MW: 25776.4 Da PI: 7.8654 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA06G0066200.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 156.9 | 1.8e-48 | 29 | 167 | 229 | 374 |
GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
+ +++lsPkv+vv+eqe++hn++ + erf+eal+yy+alfd+le++ ++ s er+ vEr llg+ei+n+vac g errerhe rle
ORGLA06G0066200.1 29 ESLRGLSPKVMVVTEQEVSHNAAGLTERFVEALNYYAALFDCLEVGGASGSVERTRVERWLLGEEIKNIVACDGGERRERHE-------RLE 113
5789*****************************************************************************9.......999 PP
GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
aGF+ vpls++a qa+++ + + dg++v+ee+g ++l+W+dr+L+svSaWr
ORGLA06G0066200.1 114 GAGFGRVPLSYYALLQARRVAQGLGCDGFKVQEEKGNFFLCWQDRALFSVSAWR 167
*****************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MALTKKAERL DVQFQFNPVV SRLDALDVES LRGLSPKVMV VTEQEVSHNA AGLTERFVEA 60
LNYYAALFDC LEVGGASGSV ERTRVERWLL GEEIKNIVAC DGGERRERHE RLEGAGFGRV 120
PLSYYALLQA RRVAQGLGCD GFKVQEEKGN FFLCWQDRAL FSVSAWRGRR FAALLPLPPS 180
TPLPCSRVIA TLLSSPPRHR LTPPAAALLS SPSVLPRAER EDEGREEGKE RV
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5b3g_A | 8e-21 | 3 | 169 | 179 | 381 | Protein SCARECROW |
| 5b3h_A | 8e-21 | 3 | 169 | 178 | 380 | Protein SCARECROW |
| 5b3h_D | 8e-21 | 3 | 169 | 178 | 380 | Protein SCARECROW |
| 5hyz_A | 7e-21 | 32 | 167 | 230 | 375 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003458 | 0.0 | AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03. |
| GenBank | AP004687 | 0.0 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
