PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0065100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 28677.7 Da PI: 4.9521 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 71 | 119 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr ps+ ++r++lg++ tae Aa+a++aa ++l+g ORGLA06G0065100.1 71 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 119 9****998.**********964...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-18 | 70 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-28 | 70 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 70 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 70 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-32 | 70 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.26E-15 | 71 | 129 | No hit | No description |
PRINTS | PR00367 | 7.0E-9 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-9 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
CALXIQEATS KCQTRHTHTE QQQQHQTARH NERSLAFQAI KRFDMVKTAA SNGAAAARRV 60 GGGGDGKRTA YKGVRMRSWG SWVSEIRAPS QKTRIWLGSY STAEAAARAY DAALLCLKGS 120 AAADLNFPVR LPFDLPAAAM SPKSIQRVAA AAAANANANA SSSCSAAVFA GVDDSGGASA 180 SEASTPACSS SDGAASPSPV SSPETVISDV DVDYSLLADI EAFFQSPKCM EYAMMDPCSA 240 FFAPPPPPAM AMEEECGWEE EGDIALWSFS SLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 61 | 128 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0065100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881784.1 | 1e-162 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | I1Q0I8 | 0.0 | I1Q0I8_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0065100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 2e-26 | ERF family protein |