PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0065100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 273aa    MW: 28677.7 Da    PI: 4.9521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0065100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1771119355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  ORGLA06G0065100.1  71 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 119
                        9****998.**********964...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1870130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-2870128IPR001471AP2/ERF domain
PROSITE profilePS5103221.73370128IPR001471AP2/ERF domain
PfamPF008471.4E-1070119IPR001471AP2/ERF domain
SMARTSM003809.0E-3270134IPR001471AP2/ERF domain
CDDcd000182.26E-1571129No hitNo description
PRINTSPR003677.0E-97182IPR001471AP2/ERF domain
PRINTSPR003677.0E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
CALXIQEATS KCQTRHTHTE QQQQHQTARH NERSLAFQAI KRFDMVKTAA SNGAAAARRV  60
GGGGDGKRTA YKGVRMRSWG SWVSEIRAPS QKTRIWLGSY STAEAAARAY DAALLCLKGS  120
AAADLNFPVR LPFDLPAAAM SPKSIQRVAA AAAANANANA SSSCSAAVFA GVDDSGGASA  180
SEASTPACSS SDGAASPSPV SSPETVISDV DVDYSLLADI EAFFQSPKCM EYAMMDPCSA  240
FFAPPPPPAM AMEEECGWEE EGDIALWSFS SLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1261128472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0065100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.11e-162ethylene-responsive transcription factor ERF014
TrEMBLI1Q0I80.0I1Q0I8_ORYGL; Uncharacterized protein
STRINGORGLA06G0065100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.12e-26ERF family protein