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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA06G0057400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22974.5 Da PI: 4.5918 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr + +g+WvAeIr p++ rkr++lg+++++e+Aa+a +aa +l+g ORGLA06G0057400.1 14 TRYKGVRLRQ-WGKWVAEIRLPNS---RKRIWLGSYDSPEKAARAFDAAFICLRG 64 68*****998.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-11 | 14 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.29E-27 | 14 | 76 | No hit | No description |
SMART | SM00380 | 3.1E-31 | 15 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 15 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-19 | 15 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-26 | 15 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MQANTTQPAP EKETRYKGVR LRQWGKWVAE IRLPNSRKRI WLGSYDSPEK AARAFDAAFI 60 CLRGGEAIAG LNFPESPPAV VARTTDPREV LAFATSHANL LSLLDAAIAQ EEEAHSFKKE 120 EEAQVEEKTA EESSDVVRAN AAPPPPVQVA GGSFDWSQLP LYSPTTTPAA EHWEEDNVEG 180 DIPVCSEMSV ETSSNSRYIG VVFQMHSYG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00601 | PBM | Transfer from AT1G74930 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA06G0057400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006056 | 0.0 | AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3GDT9 | 1e-151 | A0A0D3GDT9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1Q0B1 | 1e-153 | I1Q0B1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0057400.1 | 1e-153 | (Oryza glaberrima) | ||||
STRING | OBART06G06230.1 | 1e-152 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-33 | ERF family protein |