PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0057200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 210aa    MW: 22455.8 Da    PI: 4.5443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0057200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-181160255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr +k +g+Wv+eIr p++   r r++lg+++t+eeAa+a +aa  +l+g
  ORGLA06G0057200.1 11 KYRGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDTPEEAARAFDAAFVCLRG 60
                       8******99.**********933...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-261076IPR001471AP2/ERF domain
CDDcd000181.72E-221177No hitNo description
SMARTSM003802.4E-271181IPR001471AP2/ERF domain
PROSITE profilePS5103220.9561175IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-181163IPR016177DNA-binding domain
PfamPF008478.9E-111155IPR001471AP2/ERF domain
PRINTSPR003674.9E-101223IPR001471AP2/ERF domain
PRINTSPR003674.9E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSSSATAR KYRGVRLRKW GKWVSEIRLP NSRERIWLGS YDTPEEAARA FDAAFVCLRG  60
GGAGGEAAGN GINFPDSPPA VARTSDPQEV YAAAVSHANN RPPPPPSARA TSSALPWEEA  120
PVVAAQEAAA DMAPDVVVLP SSPVNVLAAA GSFEYWSQQP LYSPTAASLD LQRWMTAAAA  180
AEESIMEDDD DEGTSDGLWS FHYSPTRSKW
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0057200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642230.11e-126ethylene-responsive transcription factor ERF039
RefseqXP_025882167.11e-126ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0E0HM621e-148A0A0E0HM62_ORYNI; Uncharacterized protein
TrEMBLI1Q0A91e-148I1Q0A9_ORYGL; Uncharacterized protein
STRINGONIVA06G07190.11e-149(Oryza nivara)
STRINGORGLA06G0057200.11e-149(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-33ERF family protein