 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA06G0049400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 368aa MW: 38100.4 Da PI: 12.2963 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA06G0049400.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 26.9 | 8.6e-09 | 171 | 209 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq
ORGLA06G0049400.1 171 RRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 209
9*****************8.....6******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
CSRAAATRSP AAAARGRRMT SSTRCSPRCR RRGPTWGAAA AARRGSRRGR SIRQRRRRRR 60
RRCSTSRRCS RPASGITRSV GLAAAGERSR XCCSXASCTG RPAAARRTGA ARSRRCRCSR 120
TGRTCRRGRR WRAASSRPMP PPEASTRCST GSACTAAAAA PGSRRSARXL RRERIAERMK 180
SLQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMSSEGNSN 240
GSSNGGGGKA SKGGTGGEGG GGGGGGGGGT GGGMRVTEQQ VAKMMEEDMG TAMQYLQGKG 300
LCLMPISLAS AISSATSSAS LLSRPSIRHA GAPPQTMLDA AGPTSPAAMS NGDDPRHAKA 360
DSGAGGTQ
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 52 | 59 | RQRRRRRR |
| 2 | 52 | 61 | RQRRRRRRRR |
| 3 | 53 | 59 | QRRRRRR |
| 4 | 54 | 61 | RRRRRRRR |
| 5 | 55 | 61 | RRRRRRR |
| 6 | 254 | 269 | TGGEGGGGGGGGGGGT |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005919 | 0.0 | AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
