PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0030200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 527aa    MW: 54780 Da    PI: 8.5286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0030200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30178237159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  ORGLA06G0030200.1 178 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 237
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-32163237IPR003657WRKY domain
SuperFamilySSF1182902.48E-27171238IPR003657WRKY domain
PROSITE profilePS5081128.311173239IPR003657WRKY domain
SMARTSM007743.4E-37178238IPR003657WRKY domain
PfamPF031062.4E-27179237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGEVREENER LKTLLSRISH DYRSLQTHFY DVLQQGRAKK LPDSPATDIE EPEFVSLRLG  60
TSRSKCKKED KSTTSSEVKG STEDFLKIKG GLSLGLSDCR VDANNSEKVQ PDVMTLSPEG  120
SFEDARDDTA ETTEQWPPSK MLKNLRSVGA EAEDDIAPQP QVKKARVSVR ARCDAPTMND  180
GCQWRKYGQK IAKGNPCPRA YYRCTVAAGC PVRKQVQRCA DDMSILITTY EGTHNHPLSV  240
SATAMASTTS AAASMLISGS SSTSLAAYPA AAASPALAFD ASSKPPLIGG RPFFLPTAAA  300
AAITSTPSYP TITLDLTSPA AAATSSHAAF SLSNRFSHTR YPSTGFTFSG SGPSSAPWPG  360
YLSYGASLSA HPYNAGGGKS SSSFEAALSS INGSRQQGGG GGGGSAPPLY QMQQKAAAAA  420
PPPPSVITDT IAKAITADPS FHTALAAAIT SYVGKKGSPP ASGGEDSKVG LKWGEHLGLG  480
LTHSSPSTAA AAAASSSSQM FLQPSLGLSG STTSASTSPV ANREQAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-201782381776Probable WRKY transcription factor 4
2lex_A4e-201782381776Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0030200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643469.10.0probable WRKY transcription factor 72 isoform X2
TrEMBLI1PZI90.0I1PZI9_ORYGL; Uncharacterized protein
STRINGORGLA06G0030200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-61WRKY DNA-binding protein 72