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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
ORGLA06G0002900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
GRAS |
| Protein Properties |
Length: 479aa MW: 50962 Da PI: 5.7317 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA06G0002900.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 211.7 | 4.1e-65 | 125 | 478 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85
lv+ Ll++A+ +++gd + a+++Larl+++ sp g p+ R+aa + AL a p+s+t + ++ +laa+k++
ORGLA06G0002900.1 125 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALA 206
5789*************************976666676655668899999999998665554.........44333.4669999******** PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172
++sP+++f+ +t qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La + ++pp+l++T+++sp s++ el+ t+e L++fA+el
ORGLA06G0002900.1 207 DASPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAEL 297
************************************************5533.3578889******************************** PP
GRAS 173 gvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
g+pfef++lv + l++ ++ L+ p+Ea+aV+l + + ++ L++vk+l+P vvv+v++ +++++ l+ l+
ORGLA06G0002900.1 298 GIPFEFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGAFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRS 374
************999986515799999**********998887........56789********************966.......566789 PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
++al++sl+a ++ + +kvE+++l+++++ + g++ +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++
ORGLA06G0002900.1 375 CAALLESLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQ 459
9*******988.5666999*************998888887......678889*************************************** PP
GRAS 356 gslvlgWkdrpLvsvSaWr 374
++l l W++ +LvsvS+Wr
ORGLA06G0002900.1 460 AALALWWQRSELVSVSVWR 478
******************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSPSTSL GSCSSKPPED PPPPPIAADD 60
YCEDWDAVVD MHMLAPAPAP DSSFLRWIMD AGYADADTFP DHPSFDSDLL QLPMPMPSDH 120
PPQPLVDDLL DAARLLDAGD STSAREILAR LNHRLPSLPS PPGHAHPPLL RAAALLRDAL 180
LPPTALPVSS TPLDVPLKLA AHKALADASP TVQFTTFTST QAFLDALGSA RRLHLLDFDV 240
GFGAHWPPLM QELAHHWRRA AGPPPNLKVT ALVSPGSSHP LELHLTNESL TRFAAELGIP 300
FEFTALVFDP LSSASPPLGL SAAPDEAVAV HLTAGSGAFS PAPAHLRVVK ELRPAVVVCV 360
DHGCERGALN LLRSCAALLE SLDAAGASPD VVSKVEQFVL RPRVERLAVG GGDKLPPPLQ 420
SMLASAGFAA LQVSNAAEAQ AECLLRRTAS HGFHVEKRQA ALALWWQRSE LVSVSVWRC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP001129 | 0.0 | AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
