PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 314aa MW: 34100.4 Da PI: 9.4414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA05G0222500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106	4.7e-33	65	206	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ ORGLA05G0222500.1 65 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsd 151 799**********.99998885665442...133333665557******.555666688**************84445 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l ORGLA05G0222500.1 152 evdggETRWHKTGKTRPVMA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206 55544778********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-38	56	225	IPR003441	NAC domain
PROSITE profile	PS51005	33.064	65	225	IPR003441	NAC domain
Pfam	PF02365	8.2E-15	66	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MTWCNSFSDV RTAVDSSLSP AAAVAAAAGK KAAASLAVLV KMCPSCGHRA RYEQETTTIQ 60 DLPGLPAGVK FDPTDQELLE HLEGKARPDS RKLHPLVDEF IPTIEGENGI CYTHPERLPG 120 VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DEVDGGETRW HKTGKTRPVM ANGRPRGYKK 180 ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS KVFFQTQPRQ CGSTAAAAAA 240 KEASAAVAAA VVNSNYSIVH GHQGGGGGSF LKEANVVHEF YDPAATMGYR PPAPAAHFAP 300 NFAVHAARNS FGGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-11	65	206	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA05G0222500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100983	0.0	AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639992.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-126	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0D3GAT2	0.0	A0A0D3GAT2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0PR83	0.0	A0A0E0PR83_ORYRU; Uncharacterized protein
TrEMBL	I1PXX7	0.0	I1PXX7_ORYGL; Uncharacterized protein
TrEMBL	Q6AUG9	0.0	Q6AUG9_ORYSJ; Os05g0563000 protein
STRING	ORUFI05G27670.1	0.0	(Oryza rufipogon)
STRING	OS05T0563000-01	0.0	(Oryza sativa)
STRING	ORGLA05G0222500.1	0.0	(Oryza glaberrima)
STRING	OBART05G25770.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-118	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]