PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0221200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 346aa    MW: 37418.2 Da    PI: 10.5591
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0221200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-1340126186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         st+++f +l
  ORGLA05G0221200.1  40 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPEL 125
                        7******************************************99999999********************999886......589999999 PP

           trihelix  86 e 86 
                        +
  ORGLA05G0221200.1 126 D 126
                        8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2638128No hitNo description
Gene3DG3DSA:1.10.10.602.8E-438110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEVREMAVAA AAAAAASSGG GGGGLRMPPP NPNLPYREDC WSEGETEALV RAWGSRYVEL  60
NRGNLRQKQW QEVADAVNSR RGAAARRRPP RTDVQCKNRV DTLKKKYKAE RARVMPSTWS  120
FFPELDRLVG PTLSASASKR PSPSPSPVPP PPHFAMPIHP SAVRKPPSPS PSPSPPPPMA  180
LPLPSYRRGS PLPAAALIQQ EAAAAAAAAV SDSEDSEGPG DNNNHNAQRS PSQSVSSRSG  240
NSNKRSRQEV DGGFRELARA IEAFAEMYER VESAKQKQAL EIERQRIDFL KQLEVKRMEN  300
FVDAHVKLAR AKRIKKHAGT APDGIGAAEL VSSVAALPFL STSTYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0221200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133330.0AC113333.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1115_B06, complete sequence.
GenBankAK0678620.0AK067862.1 Oryza sativa Japonica Group cDNA clone:J013124K11, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.10.0trihelix transcription factor ASIL2
TrEMBLI1PXW40.0I1PXW4_ORYGL; Uncharacterized protein
STRINGORGLA05G0221200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-30sequence-specific DNA binding transcription factors