 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORGLA05G0197200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 291aa MW: 30302.5 Da PI: 7.4818 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA05G0197200.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 97.6 | 2.3e-30 | 51 | 155 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ +++ + +a++s ++
ORGLA05G0197200.1 51 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfang 138
78*************************************************************99999....22222222211111222233 PP
TCP 89 ................k 89
+
ORGLA05G0197200.1 139 gdghhgasassmledgD 155
34444333333333330 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MISNNSTNEE LGGGGRKAAD QPSGGAAAVA SSRHWSASTE SRIVRVSRVF GGKDRHSKVR 60
TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI NAAQAEIDKL PPLQFPPHDH 120
DLVAAAASSM APPPFANGGD GHHGASASSM LEDGDKAAGG GGMKAFMSLS NSLGLLNAAT 180
MPATLAAHHH HHHHAAAYYA AAESWGNGGN GGHHHDVSHG VSPSAHNSPF PSLLSLAPGS 240
HHQFVFYSPE GGGFAVKEAA AEQFPVDSLD HSQGQLTLSS ARSFLHSGSQ G
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC130604 | 0.0 | AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence. |
| GenBank | AK069938 | 0.0 | AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | GQ229484 | 0.0 | GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G60970.1 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
